View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1571_low_9 (Length: 472)
Name: NF1571_low_9
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_9 |
 | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 1964841 - 1965284
Alignment:
| Q |
19 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
118 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1964841 |
gttggacccatcatcgatacagtaacatgttctgaccgtgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
1964940 |
T |
|
| Q |
119 |
atgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcg |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||| | |
|
|
| T |
1964941 |
atgtgtctttcgggagtggtggtacactttcacacgaacaaattgttcagctggctctggggttagaattgagtaatcagaaattcctatgggttgtgtg |
1965040 |
T |
|
| Q |
219 |
agcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965041 |
agcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaag |
1965140 |
T |
|
| Q |
319 |
gagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaaccc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965141 |
gagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaaccc |
1965240 |
T |
|
| Q |
419 |
ttgaaagtgtggtgcatggagtgccactaatcgcatggcctatg |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1965241 |
ttgaaagtgtggtgcatggagtgccactaatcacatggcctatg |
1965284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 2011853 - 2011410
Alignment:
| Q |
19 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011853 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
2011754 |
T |
|
| Q |
119 |
atgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2011753 |
atgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcg |
2011654 |
T |
|
| Q |
219 |
agcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaag |
318 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
2011653 |
agcaccaagtagtagttcatctaatgcagcatatctttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagagaaccaaa |
2011554 |
T |
|
| Q |
319 |
gagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaaccc |
418 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| | |
|
|
| T |
2011553 |
gaggaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacac |
2011454 |
T |
|
| Q |
419 |
ttgaaagtgtggtgcatggagtgccactaatcgcatggcctatg |
462 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
2011453 |
ttgaaagtgtggttcatggggtgccactaatcacatggcctatg |
2011410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 1968777 - 1969223
Alignment:
| Q |
19 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
118 |
Q |
| |
|
|||||||| || ||||| |||| |||| |||| | ||||||||||||||| |||||||||||| | ||||| || ||||| || |||| |||||||||| |
|
|
| T |
1968777 |
gttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagttttgt |
1968876 |
T |
|
| Q |
119 |
atgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcg |
218 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| |||||| |||| |
|
|
| T |
1968877 |
atgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttgcg |
1968976 |
T |
|
| Q |
219 |
agcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttacc------atctgggtttttggagaga |
312 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||||||||||| ||||||| |||| ||||| | |||||||| ||||||||| ||||||||| |
|
|
| T |
1968977 |
agcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctggatctgggttcttggagaga |
1969076 |
T |
|
| Q |
313 |
acgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaact |
412 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| | |||||||| || ||||||| ||| ||||| ||||| | |
|
|
| T |
1969077 |
accaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaatt |
1969176 |
T |
|
| Q |
413 |
caacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
459 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
1969177 |
caacccttgagagtgtgttgcatggtgtgccactaatcacatggcct |
1969223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 65 - 459
Target Start/End: Complemental strand, 2004812 - 2004418
Alignment:
| Q |
65 |
atggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgt |
164 |
Q |
| |
|
|||| ||||| ||||| ||||||| || ||||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
2004812 |
atgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcacaagaacaaattgt |
2004713 |
T |
|
| Q |
165 |
tgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaa |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
2004712 |
tgagctggctttgggtttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggatatttttcagcacaa |
2004613 |
T |
|
| Q |
265 |
aatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatcc |
364 |
Q |
| |
|
||||| | |||| ||| | | ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
2004612 |
aatgatgctgacacttggcagtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtgccgcagattcaaatcc |
2004513 |
T |
|
| Q |
365 |
ttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
459 |
Q |
| |
|
| ||||| | ||| | || |||||||||| ||| ||||| ||||| |||||||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2004512 |
taagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataacatggcct |
2004418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 49 - 443
Target Start/End: Complemental strand, 2008208 - 2007814
Alignment:
| Q |
49 |
tctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacacttt |
148 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| | ||||| || ||||| ||| ||||||| ||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
2008208 |
tctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggttttgtatgtatcttttgggagtggaggtacacttt |
2008109 |
T |
|
| Q |
149 |
cacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagc |
248 |
Q |
| |
|
|||| || |||||||| ||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||| ||||| |||||||||||||||| |
|
|
| T |
2008108 |
cacaggagcaaattgtggagctagctttgggtttggaattgagtaatacaaaattcttgtgggttttgcgagcaccgagtagcagttcatctagtgcagg |
2008009 |
T |
|
| Q |
249 |
atatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggca |
348 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
2008008 |
atatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaaccaaggagaaaggttttgttattacatcatgggcg |
2007909 |
T |
|
| Q |
349 |
cctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
443 |
Q |
| |
|
|| |||||||||||||| ||||| | ||| |||| |||||||||| || ||||| ||||| ||||||||||| ||||||||||| || ||||| |
|
|
| T |
2007908 |
ccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgcc |
2007814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 54 - 459
Target Start/End: Complemental strand, 2018600 - 2018201
Alignment:
| Q |
54 |
tgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacac |
153 |
Q |
| |
|
|||||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| || |||||||| |||||||| || |
|
|
| T |
2018600 |
tgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaa |
2018501 |
T |
|
| Q |
154 |
gaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatc |
253 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||||||| || || | | ||| ||||||| |
|
|
| T |
2018500 |
gaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaagatcaccaagtaata---cagccaatgctgcatatc |
2018404 |
T |
|
| Q |
254 |
tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctca |
353 |
Q |
| |
|
||||||| | ||| | ||||||||| |||||||||| || ||||| |||||||||| ||||| |||| | || ||| ||||||||||||| || |
|
|
| T |
2018403 |
tttcagc---atctgatgttgaccctttacaatttttaccttcagggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccaca |
2018307 |
T |
|
| Q |
354 |
gattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgca |
453 |
Q |
| |
|
||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| |||||||||||| || |
|
|
| T |
2018306 |
gattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcaca |
2018207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 1963177 - 1963611
Alignment:
| Q |
19 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
118 |
Q |
| |
|
||||||||||| ||||| ||| ||||| |||| ||||||||||||| || ||||||||| ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
1963177 |
gttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcagttttgt |
1963276 |
T |
|
| Q |
119 |
atgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcg |
218 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| || |||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||| | |
|
|
| T |
1963277 |
atgtttcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatgggttgtaag |
1963376 |
T |
|
| Q |
219 |
agcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaag |
318 |
Q |
| |
|
||| |||||||||| || | | ||| |||||||||||||| | ||| | ||| ||||| | ||||||||||||||||||||||||||||| ||| |
|
|
| T |
1963377 |
agctccaagtagta---cagcaaatgctgcatatctttcagc---atctgatgttgatcctttacagtttttaccatctgggtttttggagagaaccaag |
1963470 |
T |
|
| Q |
319 |
gagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaaccc |
418 |
Q |
| |
|
|| |||| | || || ||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||| ||| ||||||||||| ||||||| |
|
|
| T |
1963471 |
gaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaaccc |
1963570 |
T |
|
| Q |
419 |
ttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
459 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
1963571 |
ttgagagtgtggtgtatggtgtgccactaatcacttggcct |
1963611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 2015252 - 2014818
Alignment:
| Q |
19 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgt |
118 |
Q |
| |
|
||||||||||| ||||| ||| ||||| |||| ||||||||||||| || || |||||| ||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
2015252 |
gttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcagttctgt |
2015153 |
T |
|
| Q |
119 |
atgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcg |
218 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| | |
|
|
| T |
2015152 |
atgtgtctttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggttgtaag |
2015053 |
T |
|
| Q |
219 |
agcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaag |
318 |
Q |
| |
|
| ||||||||| || || | | ||| |||||||||||||| | ||| | ||||||||| |||||||||| || ||||| ||||||||||| ||| |
|
|
| T |
2015052 |
atcaccaagtaata---cagccaatgctgcatatctttcagc---atctgatgttgaccctttacaatttttaccttcagggttcttggagagaacaaag |
2014959 |
T |
|
| Q |
319 |
gagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaaccc |
418 |
Q |
| |
|
|| |||| | || ||| ||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| |||| | |
|
|
| T |
2014958 |
gaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgc |
2014859 |
T |
|
| Q |
419 |
ttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
459 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
2014858 |
ttgagagtgtgttgcatggtgtgccactaatcacatggcct |
2014818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 146 - 459
Target Start/End: Original strand, 2436704 - 2437023
Alignment:
| Q |
146 |
tttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgc |
245 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2436704 |
tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaaatagtagttcatctagtgc |
2436803 |
T |
|
| Q |
246 |
agcata----tc--tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattaca |
339 |
Q |
| |
|
|||||| || |||||||||||||||| | |||||||||| |||||||||||| |||||| | |||||||| ||||| |||| | || ||| || |
|
|
| T |
2436804 |
agcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattcca |
2436903 |
T |
|
| Q |
340 |
tcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggag |
439 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| || ||| |||| || ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |
|
|
| T |
2436904 |
tcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtg |
2437003 |
T |
|
| Q |
440 |
tgccactaatcgcatggcct |
459 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
2437004 |
tgccactaatcacatggcct |
2437023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 2433066 - 2433163
Alignment:
| Q |
19 |
gttggacccatcatccagacagtaacaggttctgttgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagtttt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||| || | |||||| |||| |||||||| |
|
|
| T |
2433066 |
gttggacccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctgtcatggttggatgaccaacaaccttgctcagtttt |
2433163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 10201945 - 10201869
Alignment:
| Q |
367 |
agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
443 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
10201945 |
agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10201869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 443
Target Start/End: Complemental strand, 10209018 - 10208942
Alignment:
| Q |
367 |
agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
443 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
10209018 |
agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10208942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 63 - 459
Target Start/End: Original strand, 5902394 - 5902787
Alignment:
| Q |
63 |
taatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaatt |
162 |
Q |
| |
|
||||||| ||||||||||| |||||||| | ||||||||| ||||||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||| |
|
|
| T |
5902394 |
taatggtatggagtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaatt |
5902493 |
T |
|
| Q |
163 |
gttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcac |
262 |
Q |
| |
|
| |||| ||||| | |||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||| | |||| ||||||||||||||| |
|
|
| T |
5902494 |
gatgagttggctattggtttggaattgagtaatcataaattcttatgggttgtaagagcacca---agtagttcagccagtggtgcatatctttcagcag |
5902590 |
T |
|
| Q |
263 |
aaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaat |
362 |
Q |
| |
|
||||||| | ||| | |||| | ||||||||| ||||||| ||||||||||| |||||| |||| | || ||| |||||||||||||||||||| ||| |
|
|
| T |
5902591 |
aaaatgatgttgatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaac |
5902690 |
T |
|
| Q |
363 |
ccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
459 |
Q |
| |
|
|||||||| || ||| |||| || ||||||||||||||||| ||||| |||| |||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
5902691 |
acttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcct |
5902787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 64 - 459
Target Start/End: Original strand, 5905879 - 5906271
Alignment:
| Q |
64 |
aatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattg |
163 |
Q |
| |
|
|||||| |||||||| || |||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||| |||||||||| ||||||| || |
|
|
| T |
5905879 |
aatggtatggagtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactg |
5905978 |
T |
|
| Q |
164 |
ttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcaca |
263 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||| | ||| ||||||||||||||||| |
|
|
| T |
5905979 |
atgagctagctattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagt---tcagcatgtggtgcatatctttcagcaca |
5906075 |
T |
|
| Q |
264 |
aaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatc |
363 |
Q |
| |
|
||| || | ||| | || | | |||||||||||||||| ||||||||||| |||||| |||| | || ||| |||||||||||||||||||| ||||| |
|
|
| T |
5906076 |
aaacgatgttgatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatc |
5906175 |
T |
|
| Q |
364 |
cttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
459 |
Q |
| |
|
|||||||| | ||| |||| || ||||||||||| |||||||||| |||| |||||| || | | ||||||| |||||||||||| |||||||| |
|
|
| T |
5906176 |
cttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcct |
5906271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 458
Target Start/End: Complemental strand, 845149 - 844977
Alignment:
| Q |
286 |
tttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggag |
385 |
Q |
| |
|
||||||||| ||| |||||||| ||||| || | ||||||||| || || ||| |||||||| || ||| |||| ||| |||||||||||||||| | |
|
|
| T |
845149 |
tttttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtg |
845050 |
T |
|
| Q |
386 |
ggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcc |
458 |
Q |
| |
|
|||| || | ||| ||||||||||| ||||| ||||||||||| || ||||| | ||| |||| |||||||| |
|
|
| T |
845049 |
ggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattccaataatagcatggcc |
844977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 458
Target Start/End: Complemental strand, 870376 - 870261
Alignment:
| Q |
343 |
tgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgc |
442 |
Q |
| |
|
|||||||| || ||| |||| ||| |||||||||||||||| ||||| || | ||| ||||||||||| ||||| ||||||||||| || ||||| | | |
|
|
| T |
870376 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattc |
870277 |
T |
|
| Q |
443 |
cactaatcgcatggcc |
458 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
870276 |
caataatagcatggcc |
870261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 4299617 - 4299667
Alignment:
| Q |
375 |
ttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaag |
425 |
Q |
| |
|
||||||||| || ||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
4299617 |
ttcaattggtggattcttgactcactgtggatggaactcaaccattgaaag |
4299667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 410
Target Start/End: Complemental strand, 15496 - 15204
Alignment:
| Q |
112 |
gttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
211 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||| || |||||| ||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
15496 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
15397 |
T |
|
| Q |
212 |
ttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagag |
311 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||| |||||| | | |||||| | | ||||||||||||||||| ||||||||||| || |
|
|
| T |
15396 |
ttgtgagagcaccaagtgat---tcagttagtgcagcttatcttgaatctacaaatgaagat---cctttgaaatttttacctatagggtttttggaaag |
15303 |
T |
|
| Q |
312 |
aacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
410 |
Q |
| |
|
||| || || ||||||||| | | |||||||||||||||| || |||| |||| ||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
15302 |
aaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaa |
15204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 410
Target Start/End: Original strand, 57348 - 57640
Alignment:
| Q |
112 |
gttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
211 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||| || |||||| ||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
57348 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
57447 |
T |
|
| Q |
212 |
ttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagag |
311 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||| |||||| | | |||||| | | ||||||||||||||||| ||||||||||| || |
|
|
| T |
57448 |
ttgtgagagcaccaagtgat---tcagttagtgcagcttatcttgaatctacaaatgaagat---cctttgaaatttttacctatagggtttttggaaag |
57541 |
T |
|
| Q |
312 |
aacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
410 |
Q |
| |
|
||| || || ||||||||| | | |||||||||||||||| || |||| |||| ||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
57542 |
aaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaa |
57640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 22055 - 22175
Alignment:
| Q |
108 |
ttcagttttgtatgtgtctttcggtagtggtggtacactttcacacgaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattccta |
207 |
Q |
| |
|
||||||||||||||| ||||| || |||||||| |||||||| || |||||| |||||| ||||| ||||||||||||||| ||| | |||| | |
|
|
| T |
22055 |
ttcagttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaatcaatgagctagcttttggtttggaattgagtggtcaaagattcatt |
22154 |
T |
|
| Q |
208 |
tgggttgtgcgagcaccaagt |
228 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
22155 |
tgggtattgagagcaccaagt |
22175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 1351118 - 1351162
Alignment:
| Q |
382 |
ggagggttcttgagtcactgtggttggaactcaacccttgaaagt |
426 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
1351118 |
ggagggtttttgagtcactgtggttggaattcaacaattgaaagt |
1351162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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