View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576-INSERTION-2 (Length: 625)
Name: NF1576-INSERTION-2
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576-INSERTION-2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 7 - 625
Target Start/End: Original strand, 40767521 - 40768139
Alignment:
| Q |
7 |
agaaccatctagttccaacgtctctacaagtttcatgccaaaaaggcaacgtggtgctgaccagtccagttttggatcagatttgataatggaaaatcga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767521 |
agaaccatctagttccaacgtctctacaagtttcatgccaacaaggcaacgtggtgctgatcagtccagttttggatcagatttgataatggaaaatcga |
40767620 |
T |
|
| Q |
107 |
agcatggattcaattgaagttgatggtgtaatgagatcaaaactagaagcattggagagggcattacttgatgatagtgacattgaggaagaagaggaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40767621 |
agcatggattcaattgaagttgatggtgtaatgagatcaaaactagaagcattggagagggcattgcttgatgatagtgacattgaggaagaagaggaat |
40767720 |
T |
|
| Q |
207 |
atggtaattctcaaaccatggaaatcgatcctaacattattgattgggctgatcctgatccaattcagaatatgctgctgttccatgaccatgactcacc |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767721 |
atggtaattctcaaaccatggaaattgatcctaacattattgattgggctgatcctgatccaattcagaatatgctgctgttccatgaccatgactcacc |
40767820 |
T |
|
| Q |
307 |
aaaggagtattcgtctccagattccaatattagcagcatcagtagcaccaccaaagaaataacaaaaatttctaggacccccaagcaacttctttatgaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767821 |
aaaggagtattcgtctccagattccaatattagcagcatcagtagcaccaccaaagaaataacaaaaatttctaggacccccaagcaacttctttatgaa |
40767920 |
T |
|
| Q |
407 |
tgtgctactgcaatttcagaaggaaatgaagaggaagcatcgtcagtgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaa |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767921 |
tgtgctactgcaatttcagaaggaaatgaagaggaagcatcgtcaatgataaacaatctccgacgaattgtctcaattcaaggagagccttcccaaagaa |
40768020 |
T |
|
| Q |
507 |
ttgcagcctatatggtggagggactcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcagaccg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40768021 |
ttgcagcctatatggtggagggactcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttgaaatgcaaggaacctccttcttcggaccg |
40768120 |
T |
|
| Q |
607 |
tctagcagcgatgcagata |
625 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40768121 |
tctagcagcgatgcagata |
40768139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 479 - 625
Target Start/End: Complemental strand, 10093785 - 10093639
Alignment:
| Q |
479 |
tcaattcaaggagagccttcccaaagaattgcagcctatatggtggagggactcgccgctcgcctcgctgaatccggaaaaagtatttatagagctttga |
578 |
Q |
| |
|
|||||||| ||||| ||||| | |||||||||||||| |||||||| ||||| || ||||| | ||| ||| |||||| ||||||||| |||||||| |
|
|
| T |
10093785 |
tcaattcagggagaaccttcggatagaattgcagcctacatggtggaaggacttgctgctcgtttggcttcatcgggaaaatgtatttataaagctttga |
10093686 |
T |
|
| Q |
579 |
aatgcaaggaacctccttcttcagaccgtctagcagcgatgcagata |
625 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
10093685 |
aatgcaaggaacctccgtcttctgatcgtctagcagcaatgcagata |
10093639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 10093940 - 10093827
Alignment:
| Q |
324 |
cagattccaatattagcagcatcagtagcaccaccaaagaaata--acaaaaatttc-taggacccccaagcaacttctttatgaatgtgctactgcaat |
420 |
Q |
| |
|
||||||| ||| |||| |||| ||||||||||| |||||||| |||||| |||| | ||||||| |||||| | || ||||||||||||| ||| | |
|
|
| T |
10093940 |
cagattcaaatcttagtagcaccagtagcacca---aagaaatatcacaaaactttcctcggaccccgaagcaattactatatgaatgtgctagcgcact |
10093844 |
T |
|
| Q |
421 |
ttcagaaggaaatgaag |
437 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10093843 |
ttcagaaggaaatgaag |
10093827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 19216 times since January 2019
Visitors: 3808