View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576-INSERTION-3 (Length: 703)
Name: NF1576-INSERTION-3
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576-INSERTION-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 6 - 703
Target Start/End: Original strand, 34042109 - 34042776
Alignment:
| Q |
6 |
catgatgtcaacaaaagtgagcaaatttgtgttcatctaccacaaccatgcaactcgtgaacatgttggaagtatataaagttctttttaatcaagttat |
105 |
Q |
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| T |
34042109 |
catgatgtcaacaaaagtgagcaaatttgtgttcatctaccacaaccatgcaactcgtgaacatgttggaagtatataaagttctttttaatcaagttac |
34042208 |
T |
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| Q |
106 |
aggtttgaagtatcaacacaggtttagccgttaagtaatatccatcagagatttttctttcagacacttttgttttaaggactcgaacatgagacattgc |
205 |
Q |
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| T |
34042209 |
aggtttgaagtatcaaca--ggtttagccgttaagtaatatccatcaga---------------cacttttgttttaaggactcgaacatgagacattgc |
34042291 |
T |
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| Q |
206 |
ttaaatgtgaacatacatatgtatttatttttatttttgggtataatgaa----at-atatcagcaacttgaatgagtcaatacacgtgattatccaatt |
300 |
Q |
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| T |
34042292 |
ttaaatgtgaacata----tgtatttatttttatttttgggtacaatgaatatcatcatgtcagcaacttgaatgagtcaatacacgtgattatccaatt |
34042387 |
T |
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| Q |
301 |
tcaagtcctaagtcagtttacattttatattttaggtcgtttacttgcaaaacaagatggccaattgaactactatgtctctgtctatactcaaagtcaa |
400 |
Q |
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| T |
34042388 |
tcaagtcctaagtcagtttacattttatattttaggtcgtttacttgcaaaacaagatggccaattgaacta--------------atactcaaagtcaa |
34042473 |
T |
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| Q |
401 |
gattttgaacaattccacgaagcaaccttagtactgatgtcatgaaatatgttatgcctcatatgagacaaaataatatttttacataaataaatagcac |
500 |
Q |
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| T |
34042474 |
gattttgaacaattccacaaagcaaccttagtactgatgtcatgaaatatgttatgcctcatatgagacaaaataatatttttacataaataaatagcac |
34042573 |
T |
|
| Q |
501 |
tgatgaggagaagaaaagtggtaattgaagaagaacagtatacaaaagaagatcatggttacatgctgcatagattttagcaacaaagatttggaaataa |
600 |
Q |
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| T |
34042574 |
tgatgaggagaagaaaagtggtaattgaagaagaacagtatacaaaagaagatcatggttacatgctgcatagattttagcaacaaagatttggaaataa |
34042673 |
T |
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| Q |
601 |
gcttctttgttttcaagcctactgtagtaattgttgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatcttggttgtgtgcaaag |
700 |
Q |
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| T |
34042674 |
gcttctttgttttcaagcctactgtagtaattgttgaccgtcttattcatgaaatcaaacaattttcctcacgtgctgagaatcttggttgtgtacaaag |
34042773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 635 - 686
Target Start/End: Complemental strand, 52523552 - 52523501
Alignment:
| Q |
635 |
tgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatctt |
686 |
Q |
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| T |
52523552 |
tgaccatcttattcatgaaatcaaacaattttcctcacgtgctgagaatctt |
52523501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 619
Target Start/End: Original strand, 5898750 - 5898794
Alignment:
| Q |
575 |
ttttagcaacaaagatttggaaataagcttctttgttttcaagcc |
619 |
Q |
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| T |
5898750 |
ttttaacaacaagaatttggaaataagtttctttgttttcaagcc |
5898794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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