View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576-INSERTION-4 (Length: 676)

Name: NF1576-INSERTION-4
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576-INSERTION-4
NF1576-INSERTION-4
[»] chr7 (17 HSPs)
chr7 (61-570)||(40462523-40463034)
chr7 (199-380)||(25764023-25764203)
chr7 (199-343)||(25741332-25741476)
chr7 (199-351)||(25747502-25747654)
chr7 (199-343)||(25733631-25733775)
chr7 (199-351)||(25756070-25756222)
chr7 (609-670)||(40463133-40463194)
chr7 (8-105)||(25755913-25756016)
chr7 (8-96)||(25741175-25741269)
chr7 (8-96)||(25733474-25733568)
chr7 (567-613)||(35338368-35338415)
chr7 (8-58)||(25747345-25747394)
chr7 (564-613)||(29285582-29285632)
chr7 (562-613)||(1292089-1292141)
chr7 (391-427)||(25733824-25733860)
chr7 (391-427)||(25741525-25741561)
chr7 (562-613)||(38237491-38237543)
[»] chr1 (5 HSPs)
chr1 (8-510)||(8294066-8294577)
chr1 (62-375)||(30148670-30148987)
chr1 (61-351)||(30153414-30153709)
chr1 (489-527)||(30148516-30148554)
chr1 (562-613)||(15881347-15881399)
[»] chr5 (5 HSPs)
chr5 (565-613)||(37516566-37516614)
chr5 (569-613)||(833878-833923)
chr5 (561-613)||(14001128-14001181)
chr5 (572-612)||(40483084-40483125)
chr5 (562-613)||(42522725-42522777)
[»] chr3 (2 HSPs)
chr3 (567-613)||(13867235-13867281)
chr3 (562-613)||(2594488-2594540)
[»] chr4 (5 HSPs)
chr4 (562-613)||(47393559-47393611)
chr4 (564-613)||(27746686-27746736)
chr4 (562-613)||(4505810-4505862)
chr4 (561-605)||(11075162-11075206)
chr4 (573-613)||(54484171-54484211)
[»] chr8 (5 HSPs)
chr8 (562-613)||(15920072-15920123)
chr8 (580-613)||(1877909-1877942)
chr8 (580-613)||(42983823-42983856)
chr8 (580-613)||(44654775-44654808)
chr8 (562-613)||(4438543-4438595)
[»] chr2 (1 HSPs)
chr2 (562-613)||(32908697-32908748)
[»] chr6 (7 HSPs)
chr6 (580-614)||(23124434-23124468)
chr6 (580-613)||(14662334-14662367)
chr6 (561-613)||(22793692-22793745)
chr6 (561-605)||(32938875-32938920)
chr6 (562-613)||(8866875-8866927)
chr6 (562-613)||(8872566-8872618)
chr6 (562-613)||(32279622-32279674)
[»] scaffold0649 (1 HSPs)
scaffold0649 (573-613)||(8433-8473)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 61 - 570
Target Start/End: Original strand, 40462523 - 40463034
Alignment:
Q  61 agtcacccacaatcaaccagccttcaactgagccaagacacttatgagtgctctgccacagtgttgctctaaggtgatgtac--tttttgtactcaaact 158  Q
    |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||  ||   || ||||||||||  ||| |||||||||  |    
T  40462523 agtcacccacgatcaaccagccttcaattgagccaagacactcatgagtgctctgccacagtagtgtgttacggtgatgtacactttctgtactcaagtt 40462622  T
Q  159 gtaataaaaccttgaatttttagactgtaggaaaactagtggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttccta 258  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  ||||||||     
T  40462623 gtaataaaaccttgaatttttggaccgaaggaaaactagtggcagttcaggtaaatggcagtaatgtttgttttcaatgacattagaaacagttttcctg 40462722  T
Q  259 caagaacgacatattgctcttaaaccaaggcaatctttaaggggcaaacgcttcataatcaattctaacatatcgacgggtagatttgtcaatgtttgtt 358  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || |||| |||||| ||||||||||||||||| ||||    
T  40462723 caagaacgacatattgctcttaaaccaaggcaatctctaaggggcaaacgcttcagaatcaactcaaacacatcgactggtagatttgtcaatgtgtgtt 40462822  T
Q  359 ttctcttccatctcataattttttattttactgagccactgcatgatcattgcaacttgcaaatattagcgcaataaaaagaataggtaggtttattttg 458  Q
    ||  |||||||||||||||||||||||| | ||||| ||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  40462823 tttccttccatctcataattttttatttcattgagctactgcagaatcattgcaacttgcaaatattagtgcaataaaaagtataggtaggtttattttg 40462922  T
Q  459 attgtgatataaaagcctaattgaagtgtcttgacatcactgtataagaaaaggaattccaactacgtcgatacctcaaaacttattaatcatacaagta 558  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||    
T  40462923 attgtgatataaaagcctaattgaagtgtcttgacatcactatataagagaaggaattccaactatgtcgatacctcaaaacctagtaatcatacaagta 40463022  T
Q  559 taaataataatg 570  Q
    |||| |||||||    
T  40463023 taaaaaataatg 40463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 199 - 380
Target Start/End: Original strand, 25764023 - 25764203
Alignment:
Q  199 ggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttcctacaagaacgacatattgctcttaaaccaaggcaatctttaa 298  Q
    ||||||||||||||| || ||||||| ||||||||||||| ||| |||| ||||| || |||||||||||| || ||||| || | |||| |||||||||    
T  25764023 ggcagttcaggtaaaggggagcaatgcttgttttcaatgatattggaaactgtttcccgacaagaacgacaaatcgctctcaatctaaggtaatctttaa 25764122  T
Q  299 ggggcaaacgcttcataatcaattctaacatatcgacgggtagatttgtcaatgtttgttttctcttccatctcataatttt 380  Q
    | ||||||||||||||||||  ||| |||| ||| || ||||||||||||||| | | |||| |||||||||||||| ||||    
T  25764123 gaggcaaacgcttcataatccgttccaacacatcaactggtagatttgtcaatatgt-ttttttcttccatctcatattttt 25764203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 25741332 - 25741476
Alignment:
Q  199 ggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttcctacaagaacgacatattgctcttaaaccaaggcaatctttaa 298  Q
    |||||||| |||||  || ||||||||||||||||||||| ||| |||| | |||||||||||||||| || |||||||| || | |||| |||||||||    
T  25741332 ggcagttctggtaatgggcagcaatgtttgttttcaatgatattcgaaactattttcctacaagaacggcaaattgctctcaatctaaggtaatctttaa 25741431  T
Q  299 ggggcaaacgcttcataatcaattctaacatatcgacgggtagat 343  Q
    | ||||||||||||||||||||||| |||| ||| ||||||||||    
T  25741432 gaggcaaacgcttcataatcaattccaacacatcaacgggtagat 25741476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 199 - 351
Target Start/End: Original strand, 25747502 - 25747654
Alignment:
Q  199 ggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttcctacaagaacgacatattgctcttaaaccaaggcaatctttaa 298  Q
    ||||||||||||||| || ||||||| ||||||||||| |  || ||||  ||||||||||||||||| || |||||||| || | |||| |||||||||    
T  25747502 ggcagttcaggtaaagggcagcaatgcttgttttcaatcattttggaaaccgttttcctacaagaacggcaaattgctctcaatctaaggtaatctttaa 25747601  T
Q  299 ggggcaaacgcttcataatcaattctaacatatcgacgggtagatttgtcaat 351  Q
    | |||||||||||||||||||  || |||| |||||| |||||||||||||||    
T  25747602 gaggcaaacgcttcataatcatctccaacacatcgactggtagatttgtcaat 25747654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 25733631 - 25733775
Alignment:
Q  199 ggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttcctacaagaacgacatattgctcttaaaccaaggcaatctttaa 298  Q
    ||||||||||||||  || ||||||| ||||||||||||| ||| |||| | |||||||||||||||| || |||||||| || | |||| ||||||| |    
T  25733631 ggcagttcaggtaatgggcagcaatgcttgttttcaatgatattcgaaactattttcctacaagaacggcaaattgctctcaatctaaggtaatctttta 25733730  T
Q  299 ggggcaaacgcttcataatcaattctaacatatcgacgggtagat 343  Q
    ||||||||||||||||||||| ||| |||| |||  |||||||||    
T  25733731 ggggcaaacgcttcataatcagttccaacacatcagcgggtagat 25733775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 199 - 351
Target Start/End: Original strand, 25756070 - 25756222
Alignment:
Q  199 ggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttcctacaagaacgacatattgctcttaaaccaaggcaatctttaa 298  Q
    |||| |||||||||  || ||||||| ||||||||||||| ||| |||| ||||| || ||||||||| || |||||||| || | |||| |||||||||    
T  25756070 ggcatttcaggtaatgggcagcaatgcttgttttcaatgatattggaaactgtttcccgacaagaacggcaaattgctctcaatctaaggtaatctttaa 25756169  T
Q  299 ggggcaaacgcttcataatcaattctaacatatcgacgggtagatttgtcaat 351  Q
    | ||||||||||||||||||| ||| |||| ||| || |||||||||||||||    
T  25756170 gaggcaaacgcttcataatcatttccaacacatcaactggtagatttgtcaat 25756222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 609 - 670
Target Start/End: Original strand, 40463133 - 40463194
Alignment:
Q  609 ttataaaacccagaacaccaaggcctaaggagacgcatgtaagtaagttgtcatgttatatt 670  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||    
T  40463133 ttatataacccagaacaccaaggtctagggagacgcatgtaagtaacttgtcatgttatatt 40463194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 25755913 - 25756016
Alignment:
Q  8 gattctaacatcagtcaccggattcaaagaagaaaattttcgcaaaacctt-------gtagtcacccacaatcaaccagccttcaactgagccaagaca 100  Q
    |||||||||||||||||| ||||||||| ||||||| ||| ||||||||||       || |||| ||||||||||||| |||||||||||||||| |||    
T  25755913 gattctaacatcagtcactggattcaaa-aagaaaaattttgcaaaacctttatcagagttgtcaaccacaatcaaccaaccttcaactgagccaataca 25756011  T
Q  101 cttat 105  Q
     ||||    
T  25756012 tttat 25756016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 25741175 - 25741269
Alignment:
Q  8 gattctaacatcagtcaccggattcaaagaagaaaattttcgcaaaacctt-------gtagtcacccacaatcaaccagccttcaactgagccaa 96  Q
    |||||||||||||||||| ||||||||| ||||||||||| ||||||||||        | ||||| ||||||||||||||| |||||||||||||    
T  25741175 gattctaacatcagtcactggattcaaa-aagaaaatttttgcaaaacctttttcagaattgtcactcacaatcaaccagccgtcaactgagccaa 25741269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 25733474 - 25733568
Alignment:
Q  8 gattctaacatcagtcaccggattcaaagaagaaaattttcgcaaaaccttgt-------agtcacccacaatcaaccagccttcaactgagccaa 96  Q
    ||||||||||||| |||| ||||||||| ||||||| ||| |||||||||| |       |||||| ||||||||||||||| |||||||||||||    
T  25733474 gattctaacatcactcacgggattcaaa-aagaaaacttttgcaaaacctttttcagaatagtcactcacaatcaaccagccgtcaactgagccaa 25733568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 613
Target Start/End: Original strand, 35338368 - 35338415
Alignment:
Q  567 aatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  35338368 aatgttatattgttggtgtcattaaaaaagataagaatttatattata 35338415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 25747345 - 25747394
Alignment:
Q  8 gattctaacatcagtcaccggattcaaagaagaaaattttcgcaaaacctt 58  Q
    ||||||||||||||| || ||||||||| ||||||||||| ||||||||||    
T  25747345 gattctaacatcagttactggattcaaa-aagaaaatttttgcaaaacctt 25747394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 613
Target Start/End: Original strand, 29285582 - 29285632
Alignment:
Q  564 aataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    ||||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  29285582 aataatgttatattgttggtgttattgaaaaacataagaatttatattata 29285632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 1292141 - 1292089
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||| ||||||| |||||||||| ||||| ||||||||||||||||||    
T  1292141 ataagaatgctatattgttggtgtcattaaaaaagataagaatttatattata 1292089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 25733824 - 25733860
Alignment:
Q  391 gagccactgcatgatcattgcaacttgcaaatattag 427  Q
    |||||||||||| |||||||| |||||||||||||||    
T  25733824 gagccactgcataatcattgccacttgcaaatattag 25733860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 25741525 - 25741561
Alignment:
Q  391 gagccactgcatgatcattgcaacttgcaaatattag 427  Q
    |||||||||||| |||||||| |||||||||||||||    
T  25741525 gagccactgcataatcattgccacttgcaaatattag 25741561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 38237543 - 38237491
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| ||||||||| || |||||||||| ||||| ||||||||||||||||||    
T  38237543 ataaaaatgttatactgttggtgtcattgaaaaagataagaatttatattata 38237491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 510
Target Start/End: Complemental strand, 8294577 - 8294066
Alignment:
Q  8 gattctaacatcagtcaccggattcaaagaagaaaattttcgcaaaaccttgt-------agtcacccacaatcaaccagccttcaactgagccaagaca 100  Q
    ||||||||||||| |||| |||||||| |||||||||||| |||||||||| |       ||||||  ||||||||||| |||||||||||||||| |||    
T  8294577 gattctaacatcaatcactggattcaa-gaagaaaatttttgcaaaacctttttcagaatagtcacttacaatcaaccatccttcaactgagccaacaca 8294479  T
Q  101 cttatgagtgctctgccacagtgttgctctaaggtgatgtac--tttttgtactcaaactgtaataaaaccttgaatttttagactgtaggaaaactagt 198  Q
     |||| |||| ||| |||  ||| || ||||||| || ||||  ||||||||||||  || ||| | |||  ||||||||| |||||||   ||||||||    
T  8294478 tttatcagtgttcttcca--gtggtgttctaaggggaagtacaatttttgtactcaggctataaaagaacactgaatttttggactgtaatgaaactagt 8294381  T
Q  199 ggcagttcaggtaaatgga----agcaatgtttgttttcaatgacattagaaattgt--tttcctacaagaacgacatattgctcttaaaccaaggcaat 292  Q
    |||| |||||||||||| |    ||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||| | ||||||||    
T  8294380 ggcaattcaggtaaatgcatggcagcaatgcttgttttcaatgacattagaaattgtgttttcctacaagaacggcatattgctcgtaatctaaggcaat 8294281  T
Q  293 ctttaaggggcaaacgcttcataatcaattctaacatatcgacgggtagatttgtcaatgt-ttgttttctcttccatctcataattttttattttactg 391  Q
    |||||||||| |||||||||||||||||||| |||| ||| || ||||||||| ||||||| ||||||  | |||||||||||   |||| |||| |  |    
T  8294280 ctttaaggggaaaacgcttcataatcaattccaacacatcaacaggtagatttatcaatgtgttgttt--ttttccatctcatccgttttcatttcaacg 8294183  T
Q  392 agccactgcatgatcattgcaacttgcaaatattagcgcaataaaaagaataggtaggtttattttgattgtgatataaaagcctaattgaagtgtcttg 491  Q
    ||||||||||  |||||||||| ||||||| ||||| | | |||||  | ||  || |||| |||||||| |||| ||||||  | | | ||||||||||    
T  8294182 agccactgcagaatcattgcaagttgcaaacattagtgtattaaaataagta--taagtttcttttgattttgatgtaaaaggatcactaaagtgtcttg 8294085  T
Q  492 acatcactgtataagaaaa 510  Q
    |||||||| ||||| ||||    
T  8294084 acatcactatataaaaaaa 8294066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 62 - 375
Target Start/End: Complemental strand, 30148987 - 30148670
Alignment:
Q  62 gtcacccacaatcaaccagccttcaactgagccaagacacttatgagtgctctgccacagtgttgctctaaggtgatgtac--tttttgtactcaaactg 159  Q
    |||||||||||||||||||||||||||||| ||||||||  ||| | ||| |    |  ||| || ||||| | |||||||  ||||||||| ||| ||     
T  30148987 gtcacccacaatcaaccagccttcaactgacccaagacatctattattgcgccctaattgtggtgttctaatgcgatgtacactttttgtacccaagcta 30148888  T
Q  160 taataaaaccttgaatttttagactgtaggaaaactagtggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttcctac 259  Q
    |||   |||||||| ||||| || |  |||||||||| ||||||||||||||||||| ||||| | ||||||||||||| |||||||| |||||||||||    
T  30148887 taaaggaaccttgattttttggatttcaggaaaactaatggcagttcaggtaaatggcagcaacgcttgttttcaatgaaattagaaactgttttcctac 30148788  T
Q  260 aagaacgacatattgctcttaaaccaaggcaatctttaaggggcaaacgcttc---ataatcaattctaacatatcgacgggtagatttgtcaatgt-tt 355  Q
    ||||||||||  |||| ||||| ||||| ||||||||||||||||| || |||   || |||||||| |||| |||||| ||||||||||||||| | ||    
T  30148787 aagaacgacaggttgcccttaatccaagccaatctttaaggggcaagcggttcagaatcatcaattccaacacatcgaccggtagatttgtcaatatatt 30148688  T
Q  356 gttttctcttccatctcata 375  Q
    ||||  ||||||||||||||    
T  30148687 gttt--tcttccatctcata 30148670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 61 - 351
Target Start/End: Complemental strand, 30153709 - 30153414
Alignment:
Q  61 agtcacccacaatcaaccagccttcaactgagccaagacacttatgagtgctctgccacagtgttgctctaaggtgatgtac--tttttgtactcaaact 158  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| | ||| |    |  ||| || ||||| | |||||||  ||||||||| ||| ||    
T  30153709 agtcacccacaatcaaccagccttcaactgagccaagacatctattattgcgccctaattgtggtgttctaatgcgatgtacactttttgtacccaagct 30153610  T
Q  159 gtaataaaaccttgaatttttagactgtaggaaaactagtggcagttcaggtaaatggaagcaatgtttgttttcaatgacattagaaattgttttccta 258  Q
     |||   |||||||| ||||| || |  |||||||||| ||||||||||||||||||  ||||| | ||||||||||||| |||||||| ||||||||||    
T  30153609 ataaaggaaccttgattttttggatttcaggaaaactaatggcagttcaggtaaatgacagcaacgcttgttttcaatgaaattagaaactgttttccta 30153510  T
Q  259 caagaacgacatattgctcttaaaccaaggcaatctttaaggggcaaacgcttc---ataatcaattctaacatatcgacgggtagatttgtcaat 351  Q
    |||||||||||  |||| ||||| ||||| ||||||||||||||||| || |||   || |||||||| |||| |||||| |||||||||||||||    
T  30153509 caagaacgacaggttgcccttaatccaagccaatctttaaggggcaagcggttcagaatcatcaattccaacacatcgaccggtagatttgtcaat 30153414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 527
Target Start/End: Complemental strand, 30148554 - 30148516
Alignment:
Q  489 ttgacatcactgtataagaaaaggaattccaactacgtc 527  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30148554 ttgacatcactatataagaaaaggaattccaactacgtc 30148516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 15881347 - 15881399
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    ||||||||||||||||| |||||||||  ||||| ||||||||| ||||||||    
T  15881347 ataataatgttatattgttggtgtcataaaaaaatataagaattaatattata 15881399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 613
Target Start/End: Complemental strand, 37516614 - 37516566
Alignment:
Q  565 ataatgttatattgatggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  37516614 ataatgttattttgttggtgtcattcaaaaaataagaatttatattata 37516566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 613
Target Start/End: Original strand, 833878 - 833923
Alignment:
Q  569 tgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||    
T  833878 tgttatattgttggtgtcattcaaaaagataagaatttagattata 833923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 613
Target Start/End: Complemental strand, 14001181 - 14001128
Alignment:
Q  561 aataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    ||||| |||||||| ||| || ||||||||||||| ||||||||||||||||||    
T  14001181 aataagaatgttattttgttgatgtcattcaaaaagataagaatttatattata 14001128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 612
Target Start/End: Original strand, 40483084 - 40483125
Alignment:
Q  572 tatattgatggtgtcattcaa-aaaataagaatttatattat 612  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  40483084 tatattgatggtgtcattcaacaatataagaatttatattat 40483125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 42522777 - 42522725
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    ||||||||||||||||| |||||| ||| ||||| |||||||||| |||||||    
T  42522777 ataataatgttatattgttggtgttattaaaaaatataagaatttttattata 42522725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 567 - 613
Target Start/End: Original strand, 13867235 - 13867281
Alignment:
Q  567 aatgttatattgatggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||    
T  13867235 aatgttatattattggtgtcattcaaaatataagaatttatattata 13867281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 2594488 - 2594540
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  2594488 ataacaatgttattttgctggtgtcattcaaaaagataagaatttatattata 2594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 47393559 - 47393611
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  47393559 ataaaaatgttatattgttggtgtcattcaaaaatataagaaattatattata 47393611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 613
Target Start/End: Complemental strand, 27746736 - 27746686
Alignment:
Q  564 aataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    ||||||||||||||  |||||||||| ||||| ||||||||||||||||||    
T  27746736 aataatgttatattattggtgtcattgaaaaagataagaatttatattata 27746686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 4505810 - 4505862
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    ||||||||  ||| ||| |||||||||||||||| ||||||||||||||||||    
T  4505810 ataataatcctattttgttggtgtcattcaaaaagataagaatttatattata 4505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 561 - 605
Target Start/End: Complemental strand, 11075206 - 11075162
Alignment:
Q  561 aataataatgttatattgatggtgtcattcaaaaaataagaattt 605  Q
    |||||||||||||||| | |||||| ||| |||||||||||||||    
T  11075206 aataataatgttatatcgttggtgttattaaaaaaataagaattt 11075162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 613
Target Start/End: Original strand, 54484171 - 54484211
Alignment:
Q  573 atattgatggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||| |||| ||||||||||||||||||||||| |||||    
T  54484171 atattgttggtatcattcaaaaaataagaatttattttata 54484211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 15920072 - 15920123
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaaataagaatttatattata 613  Q
    ||||||||||||||||| |||||| ||| |||| |||||||||| |||||||    
T  15920072 ataataatgttatattgttggtgttattaaaaagataagaatttttattata 15920123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 613
Target Start/End: Original strand, 1877909 - 1877942
Alignment:
Q  580 tggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||||||| |||||||||||||||||||||||    
T  1877909 tggtgtcatttaaaaaataagaatttatattata 1877942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 613
Target Start/End: Complemental strand, 42983856 - 42983823
Alignment:
Q  580 tggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||||||| |||||||||||||||||||||||    
T  42983856 tggtgtcatttaaaaaataagaatttatattata 42983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 613
Target Start/End: Complemental strand, 44654808 - 44654775
Alignment:
Q  580 tggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||||||| |||||||||||||||||||||||    
T  44654808 tggtgtcatttaaaaaataagaatttatattata 44654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 4438543 - 4438595
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||||||||||| |||| ||||| ||||| ||||||||||||||||||    
T  4438543 ataagaatgttatattgttggtatcattaaaaaagataagaatttatattata 4438595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 32908697 - 32908748
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaaataagaatttatattata 613  Q
    ||||||||||||||||| |||||||||| ||||  ||||| |||||||||||    
T  32908697 ataataatgttatattgttggtgtcattgaaaaggtaagagtttatattata 32908748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 614
Target Start/End: Original strand, 23124434 - 23124468
Alignment:
Q  580 tggtgtcattcaaaaaataagaatttatattataa 614  Q
    |||||||||| ||||||||||||||||||||||||    
T  23124434 tggtgtcattaaaaaaataagaatttatattataa 23124468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 613
Target Start/End: Complemental strand, 14662367 - 14662334
Alignment:
Q  580 tggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||||||| |||||||||||||||||||||||    
T  14662367 tggtgtcattaaaaaaataagaatttatattata 14662334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 613
Target Start/End: Complemental strand, 22793745 - 22793692
Alignment:
Q  561 aataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||||| |||||||    
T  22793745 aataataatgttatattgttggtgttatttaaaaagataagaatttttattata 22793692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 32938875 - 32938920
Alignment:
Q  561 aataataatgttatattgatggtgtcattcaaaaa-ataagaattt 605  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||    
T  32938875 aataataatgttatattgttggtgtcattaaaaaatataagaattt 32938920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 8866927 - 8866875
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||||| ||||| |||||||||| ||||| ||||||||||||||||||    
T  8866927 ataagaatgttttattgttggtgtcattaaaaaagataagaatttatattata 8866875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 8872618 - 8872566
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||||| ||||| |||||||||| ||||| ||||||||||||||||||    
T  8872618 ataagaatgttttattgttggtgtcattaaaaaagataagaatttatattata 8872566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 32279674 - 32279622
Alignment:
Q  562 ataataatgttatattgatggtgtcattcaaaaa-ataagaatttatattata 613  Q
    |||| |||||||| ||| |||||||||| ||||| ||||||||||||||||||    
T  32279674 ataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattata 32279622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 573 - 613
Target Start/End: Complemental strand, 8473 - 8433
Alignment:
Q  573 atattgatggtgtcattcaaaaaataagaatttatattata 613  Q
    |||||| |||||||||| |||||||||||||||| ||||||    
T  8473 atattgttggtgtcattaaaaaaataagaatttagattata 8433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 16605 times since January 2019
Visitors: 3770