View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576-INSERTION-6 (Length: 574)

Name: NF1576-INSERTION-6
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576-INSERTION-6
NF1576-INSERTION-6
[»] chr7 (8 HSPs)
chr7 (9-574)||(3686166-3686744)
chr7 (19-164)||(3650596-3650747)
chr7 (400-491)||(3703297-3703388)
chr7 (13-92)||(3706868-3706947)
chr7 (416-481)||(3675811-3675877)
chr7 (312-386)||(3687028-3687100)
chr7 (20-90)||(3695438-3695511)
chr7 (127-164)||(3706790-3706827)
[»] chr6 (1 HSPs)
chr6 (65-139)||(213314-213388)
[»] chr3 (2 HSPs)
chr3 (36-152)||(9495052-9495171)
chr3 (311-370)||(41979687-41979749)
[»] chr1 (1 HSPs)
chr1 (315-367)||(4432410-4432462)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 574
Target Start/End: Complemental strand, 3686744 - 3686166
Alignment:
Q  9 ttatgtccacgatagagtaagcacagtaaagttataccacgataacattaaaatcttttcaatgcaagataacaaactcaattatgaattcagtttttga 108  Q
    |||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3686744 ttatgtccacgatagactaagcacggtaaagttataccacgaaaacattagaatcttttcaatgcaagataacaaactcaattatgaattcagtttttga 3686645  T
Q  109 cgattgaatcaggaggtggccaaaacaagtttaaatactcaggatcatccgacatagtgaaatccggacatgccctattttgcatttggatggaggtcgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3686644 cgattgaatcaggaggtggccaaaacaagtttaaatactcatgatcatccgacatagtgaaatccggacatgccctattttgcatttggatgaaggtcgt 3686545  T
Q  209 atttctccaaacaacgaagtggaatttgaaggaattggatgaagggggatagcaagatcgtaaaacaaagttg------nnnnnnnnnnnnnnncttctt 302  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||    
T  3686544 atttctccaaacagcgaagtggaatttgaaggaattggatgaagggggatagcaagatcgtaaaacaaagttgtttttcctttttttttctttttttctt 3686445  T
Q  303 cttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtactatatatggtttatgccat------atatc 396  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |      ||  |    
T  3686444 tttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtattatatatggtttatgccttttgttcattac 3686345  T
Q  397 atc-gtttcatgtctatcttattattatcatcgtttcatgtcttagttagaagttacttcaaacaaattccatatctagatgccttagcagaaatgacga 495  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  3686344 atctgtttcatgtctatcttattattatcatcgtttcatgtcttagttagaagttacttcaaacaaattccatatcttgatgccttggcagaaatgacga 3686245  T
Q  496 tatctagagcttggccactccctcacaaaaccactcagcaactagcaagtaaccactttcttttttcttttctccctaa 574  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3686244 tatctagagcttggtccctccctcacaaaaccactcggcaactagcaagtaaccactttcttttttcttttctccctaa 3686166  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 3650596 - 3650747
Alignment:
Q  19 gatagagtaagcacagtaaagttataccacgataacattaaaatcttttcaatgcaagataacaaactcaatta--------tgaattcagtttttgacg 110  Q
    |||||| |||||||| ||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||        |||| ||  ||||||| |    
T  3650596 gatagactaagcacaataaagttataccacgatcacattagaatattttcaatgcaagataacatactcaattacgatctagtgaaatc--tttttgatg 3650693  T
Q  111 attgaatcaggaggtggccaaaacaagtttaaatactcaggatcatccgacata 164  Q
    || || |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  3650694 atcgactcaggaggaggccataacaagtttaaatactcaggatcatccgacata 3650747  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 491
Target Start/End: Complemental strand, 3703388 - 3703297
Alignment:
Q  400 gtttcatgtctatcttattattatcatcgtttcatgtcttagttagaagttacttcaaacaaattccatatctagatgccttagcagaaatg 491  Q
    |||||||| |||||||||| |||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |||||    
T  3703388 gtttcatgcctatcttattgttatcatcatttcatgtcttagttacaagctacttcaaataaattccatatctagatgccttagcaaaaatg 3703297  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 3706947 - 3706868
Alignment:
Q  13 gtccacgatagagtaagcacagtaaagttataccacgataacattaaaatcttttcaatgcaagataacaaactcaatta 92  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||    
T  3706947 gtccaagatagactaagcacagtaaagttataccacgatcacattagaatattttcaatgcaagataacatactcaatta 3706868  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 481
Target Start/End: Complemental strand, 3675877 - 3675811
Alignment:
Q  416 attattatcatcgtttcatgtcttagttagaag-ttacttcaaacaaattccatatctagatgcctt 481  Q
    |||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  3675877 attattgtcatcatttcatgtcttagttagaagcttacttcaaataaattccatatcaagatgcctt 3675811  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 386
Target Start/End: Original strand, 3687028 - 3687100
Alignment:
Q  312 atcatcatttgaaagggatcttgtgcttttgttttct-aaattgttcttactatgttagtactatatatggtttat 386  Q
    |||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||   ||||||||||||||    
T  3687028 atcatcatttgaaagggatcatgtgcttttcttttttaaaattgttcttactatgttag---tatatatggtttat 3687100  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 3695438 - 3695511
Alignment:
Q  20 atagagtaagcacagtaaagttataccacgataacattaaaatcttt---tcaatgcaagataacaaactcaat 90  Q
    |||| ||||||||| ||||| ||||||||||| ||||||||||||||   |||||||| ||||||| |||||||    
T  3695438 atagggtaagcacaataaagctataccacgatcacattaaaatcttttaatcaatgcatgataacatactcaat 3695511  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 3706827 - 3706790
Alignment:
Q  127 gccaaaacaagtttaaatactcaggatcatccgacata 164  Q
    |||| |||||||||||||||||||||||||||||||||    
T  3706827 gccagaacaagtttaaatactcaggatcatccgacata 3706790  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 213388 - 213314
Alignment:
Q  65 tttcaatgcaagataacaaactcaattatgaattcagtttttgacgattgaatcaggaggtggccaaaacaagtt 139  Q
    |||||||||||||||||| ||||| ||| |||||||| ||||||||||  | || ||||||||||| ||||||||    
T  213388 tttcaatgcaagataacatactcacttacgaattcagcttttgacgatccactcgggaggtggccagaacaagtt 213314  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 9495171 - 9495052
Alignment:
Q  36 aaagttataccacgataacattaaaatcttttcaatgcaagataacaaactcaattatgaattcagttt---ttgacgattgaatcaggaggtggccaaa 132  Q
    |||| |||| ||| || |||||||||   ||| |||||||||||||| ||||| ||||| |||||| ||   ||||||||  |||| ||||||||||| |    
T  9495171 aaagctatatcacaatcacattaaaaagcttttaatgcaagataacatactcagttatgcattcagcttcttttgacgatccaatccggaggtggccaga 9495072  T
Q  133 acaagtttaaatactcagga 152  Q
    ||||||| ||||| ||||||    
T  9495071 acaagttaaaatattcagga 9495052  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 41979749 - 41979687
Alignment:
Q  311 tatcatcatttgaa---agggatcttgtgcttttgttttctaaattgttcttactatgttagt 370  Q
    ||||||||||||||   |||||||  |||| |||||||  |||||||||||||||||||||||    
T  41979749 tatcatcatttgaatgaagggatcaggtgcatttgtttattaaattgttcttactatgttagt 41979687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 4432462 - 4432410
Alignment:
Q  315 atcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgtt 367  Q
    |||||||||| |||||| ||||  || | ||||||||||||||||||||||||    
T  4432462 atcatttgaaggggatcatgtgaattggctttctaaattgttcttactatgtt 4432410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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