View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576-INSERTION-8 (Length: 365)
Name: NF1576-INSERTION-8
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576-INSERTION-8 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 655641 - 655302
Alignment:
| Q |
8 |
aagagtgcattccttcaaggagaacttaaggaagaggtgtatgtacaacaacctactggctttgagaagaagggagaagaagaaaaggtatataagctaa |
107 |
Q |
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| T |
655641 |
aagagtgcattccttcaaggagaacttaaggaagatgtgtatgtacaacaacctactggctttgagaagaagggagaagaagaaaaggtatataagctaa |
655542 |
T |
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| Q |
108 |
ataaagcttcagacggactgaaacaggctccgcgagcatggtccagtcgcatagaatcctacttcgttcgagagggtttcgaaaggtgtgcttctgaaca |
207 |
Q |
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| T |
655541 |
ataaagctttatacggactgaaacaggctccgcgagcatggtacagtcgcatagaatcctacttcgttcgagagggtttcgaaaggtgtgcttctgaaca |
655442 |
T |
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| Q |
208 |
tacactccttacaaaagaaaaggagggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgag |
307 |
Q |
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| T |
655441 |
tacactctttacaaaagaaaaggagagaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgag |
655342 |
T |
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| Q |
308 |
gaatttaagatgtcaatgatgcatgaatttgacatgtcag |
347 |
Q |
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| T |
655341 |
gaatttaagatgtcaatgatgcatgaatttgacatgtcag |
655302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 14246936 - 14247031
Alignment:
| Q |
233 |
ggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaagatgtcaatgatg |
328 |
Q |
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| T |
14246936 |
ggaggtaaactcttaattgtaagcctttatgttgatgatttaatttttaccgggaatgatagaagcatgtgtgatgagtttaaaaactcaatgatg |
14247031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 345
Target Start/End: Original strand, 11850427 - 11850614
Alignment:
| Q |
158 |
atagaatcctacttcgttcgagagggtttcgaaaggtgtgcttctgaacatacactccttacaaaagaaaaggagggaggtaaaatcctaattgtcagtc |
257 |
Q |
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| T |
11850427 |
atagaagcatactttgttcgagaaggttttgaaaaatgtttttgtgaacatacattgtttacaaaaacaaaggaaggaaacaagattctaatagtaagtc |
11850526 |
T |
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| Q |
258 |
tttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaagatgtcaatgatgcatgaatttgacatgtc |
345 |
Q |
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| T |
11850527 |
tttatgtagatgatttaatatataccgggaatgatataaatatgtgtgatgaatttaaaaattcaatgatggtagaatttgacatgtc |
11850614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 1046 - 964
Alignment:
| Q |
233 |
ggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaa |
315 |
Q |
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| T |
1046 |
ggaggtaaactcttaattgtaagcctttatgttgatgatttaatttttaccgggaatgatagaagcatgtgtgatgagtttaa |
964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 6490 - 6408
Alignment:
| Q |
233 |
ggaggtaaaatcctaattgtcagtctttacgttgatgatttgatttatactgggaatgataaaagtatttgtgaggaatttaa |
315 |
Q |
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| T |
6490 |
ggaggtaaactcttaattgtaagcctttatgttgatgatttaatttttaccgggaatgatagaagcatgtgtgatgagtttaa |
6408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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