View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_high_1 (Length: 1660)
Name: NF1576_high_1
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 724; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 887 - 1650
Target Start/End: Complemental strand, 2786927 - 2786164
Alignment:
| Q |
887 |
tgtgtgcactcactctcttttgtttttgcgttcttgtttcaaactttcaacaccatggccgagaagaaggtcatcgttgtcgtcgaaggcaccgctgcga |
986 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
2786927 |
tgtgtgcactcactctcttttgtttttgcgctcttgtttcaaactttcaacaccatggcggagaagaaggtcatcgttgtcgtcgaaagcaccgctgcga |
2786828 |
T |
|
| Q |
987 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgccaagtccctttgtgggaacgaacctgctgtttccaactctcagtttgccct |
1086 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2786827 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgtcaagtccctttgtgggaacgaacctgctgtttccaacgctcagtttgccct |
2786728 |
T |
|
| Q |
1087 |
agtcacctatcatactcatggcatttatgctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctata |
1186 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786727 |
agtcacctatcatactcatggcatttattctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctata |
2786628 |
T |
|
| Q |
1187 |
tccttttccggtggtggttttaatgacaccgctgtcgctgaagggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaa |
1286 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2786627 |
tccttttccggtggtggtttaaatgacaccgctgtcgctgaagggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaa |
2786528 |
T |
|
| Q |
1287 |
agaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattga |
1386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2786527 |
agaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattga |
2786428 |
T |
|
| Q |
1387 |
ctcggaatcaggtaaccagttttatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttccc |
1486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2786427 |
ctcggaatcaggtaaccagttttatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttccc |
2786328 |
T |
|
| Q |
1487 |
aaaatcaaagccatctacaatgctggagctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactg |
1586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2786327 |
aaaatcaaagccatctacaatgctggagctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactg |
2786228 |
T |
|
| Q |
1587 |
ccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgt |
1650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2786227 |
ccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgacgatgt |
2786164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 298 - 816
Target Start/End: Complemental strand, 2787519 - 2786998
Alignment:
| Q |
298 |
gtctaacgctagtttggcctatgcacattttgtcggggactgaaatgagccttcactcttttaannnnnnnnnatatatacattaaaatcgtgtgttaag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2787519 |
gtctaacgctagtttggcctatgcacattttgtcggagaccaaaatgagccttcactcttttaaaaatcttt--tatatacattaaaatcgtgtgttaag |
2787422 |
T |
|
| Q |
398 |
aatcttaattgtnnnnnnnntcattttaacaaattctcttaaaatctctcac-gagtcaataaaaacccacaaattttttaaacaatatcg----ttata |
492 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2787421 |
aatcttaattgtaaaaaaaatcattttaacaaattctcttaaaatctctcactgagtcaataaaaacccacaaattttttaaacaatatcgctatatata |
2787322 |
T |
|
| Q |
493 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2787321 |
tcatgcgaaagaaattataacaaaaaggatcacaaaagagatttataaaccaatgaaaagatagagtttgcggaattcatgaattgtttgttgaaaagtg |
2787222 |
T |
|
| Q |
593 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatatacgtggcaatgctatcatgata |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
2787221 |
acggaagtcaacactaaagacttggtggaatacagttggcgatgttatcgtttcaacggtaaagaattgatggaatacacgtggcgatgctatcatgata |
2787122 |
T |
|
| Q |
693 |
ttttggttcgctattggcgatgttattgtttcaacggtaaagaattaatggaatacatgtggcgatgctatcgtgatattttgattcgctacaagtagcg |
792 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2787121 |
ttttggttcgctattggcgatgttatcgtttcaacggtaaagaattaatggaatacacgtggtgatgctatcgtgatattttggttcgctacaagtagcg |
2787022 |
T |
|
| Q |
793 |
tcaccctttttaaaaattaaaaga |
816 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
2787021 |
tcacccattttaaaaattaaaaga |
2786998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 2787626 - 2787537
Alignment:
| Q |
160 |
aagacgactgtattgtcatatattcccagacaaggttcaaaaataggaagaaaattgttggttgaagacaaaaattgacggaatgactaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2787626 |
aagacgactgtattgtcatatattcccagtcacggttcaaaaataggaagaaaattgttggttgaagacgaaaattgacggaatgactaa |
2787537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 2787795 - 2787655
Alignment:
| Q |
16 |
atcaatttagtttcataaaatttaacaaattgcatttttatcatggagnnnnnnnn--tgactaatttcagttttaattaaatttttatagggaccaaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2787795 |
atcaatttagtttcataaaatttaacaaattgcatttttgtcatggagaaaaaaaaaatgactaatttcagttttaattaaatttttatagggaccaaat |
2787696 |
T |
|
| Q |
114 |
catccc-nnnnnnntttgtagagacttaactgtcccttatc |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
2787695 |
catcccaaaaaaattttgtagagacttaactgtcccttatc |
2787655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 5e-26; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-26
Query Start/End: Original strand, 1124 - 1249
Target Start/End: Original strand, 22515971 - 22516096
Alignment:
| Q |
1124 |
ctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggttttaatgacaccgctgtcg |
1223 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||||||||| | ||| || ||||||| | ||||| |||||||||||||||||| | ||| | | |
|
|
| T |
22515971 |
ctcgtgcaacgtactggctggacaagagacccagatgttttcttacagtggctagaatctataccattttctggtggtggttttaatgacgcagctattg |
22516070 |
T |
|
| Q |
1224 |
ctgaagggcttgctgaagctttgatg |
1249 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
22516071 |
ctgaagggcttgctgaagctctgatg |
22516096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1249 - 1365
Target Start/End: Original strand, 22517146 - 22517262
Alignment:
| Q |
1249 |
gatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaag |
1348 |
Q |
| |
|
||||||| |||| |||||||||| | ||| ||||| ||||||| |||| | ||||||||||| ||||||||||||||||||||||| |||||| || |
|
|
| T |
22517146 |
gatgttccccccttctcaaagtggaggcctaaatcagcagaatgtggatacgaacatgcactgtatccttgtggcagccagtaatccttacccattgcag |
22517245 |
T |
|
| Q |
1349 |
agaccaatatatgttcc |
1365 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
22517246 |
acaccggtatatgttcc |
22517262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1450 - 1509
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
1450 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
1509 |
Q |
| |
|
|||||||||||| ||| ||||||||| | | ||||||||||| ||||||||||||||||| |
|
|
| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1368 - 1444
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
1368 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
1444 |
Q |
| |
|
|||||| ||||||||||||||| || || || |||||||| ||||||||||||| |||||||||||| ||||||||| |
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|
| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1546 - 1595
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
1546 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
1595 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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