View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_12 (Length: 509)
Name: NF1576_high_12
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 41447498 - 41447006
Alignment:
| Q |
11 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41447498 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagtggaattactc |
41447399 |
T |
|
| Q |
111 |
aacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccctaatgtaaaaaacacaagaaatt----tttctg----- |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |
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| T |
41447398 |
aacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtcgacaccctaatgtaaaaaacacaagacaacgacattgctacacta |
41447299 |
T |
|
| Q |
202 |
--ttgattttaatcaaaataagatatatatctattacaaacatgttgatttttctgnnnnnnnatttatctacacctcaagggatgcagcgacaacaagt |
299 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41447298 |
catatatattaatcaaaataagatatatatctattacaaacatgttgatttttctgtttttt-atttatctacacctcaagggatgcagcgacaacaagt |
41447200 |
T |
|
| Q |
300 |
aattttatgatattatatttttgttcaacaactgtgatttccttgattaatcggtcgaacacttccttcactgaagacagtatgttcttgttcaaggatt |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41447199 |
gattttatgatattatatttttcttcaacaactgtgatttccttgattaatcggtcgaacacttccttcactgaaaacagtatgttcttgttcaaggatt |
41447100 |
T |
|
| Q |
400 |
ttttccattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatgacattgtcccaggatg |
493 |
Q |
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| T |
41447099 |
ttttccattgaacttgaaggaatagaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatgacattgtcccaggatg |
41447006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 41457684 - 41457204
Alignment:
| Q |
11 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactc |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
41457684 |
cacagaaggtaaaggaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactcttacatgaattactc |
41457585 |
T |
|
| Q |
111 |
aacttaacaaatcattataaaccactatgaagc------tctgacacaacctggacatgtcgacaccc-taatgtaaaaaacacaaga-aatttttctg- |
201 |
Q |
| |
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|||||||||| |||| |||||| |||||||||| ||||||||||| | ||| |||||||||| ||||||||||| ||||||| || | | |
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| T |
41457584 |
aacttaacaagtcatgataaacaactatgaagcacgaactctgacacaacacg-acacgtcgacacccctaatgtaaaaagcacaagacaacgacaccgc |
41457486 |
T |
|
| Q |
202 |
----ttgattttaatcaaaataagatatatatctattacaaacatgttgatttttctgnnnnnnnatttatctacacctcaagggatgcagcgacaacaa |
297 |
Q |
| |
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| | |||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||| ||||||||| ||||| |
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| T |
41457485 |
cacatataaattaatcaaaataagatatat--ctattacacacatgttgatttttctgctt-----tttagttacacctcaaaggatgcagcaccaacag |
41457393 |
T |
|
| Q |
298 |
gtaattttatg----atattatatttttgttcaacaactgtgatttccttgattaatcggtcgaacacttccttcactgaagacagtatgttcttgttca |
393 |
Q |
| |
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| ||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41457392 |
atgattttatttattatattatatttttcttcaacaactgtgatttctttgattaaccggtcgaacacttccttcactgaagacagtatgttcttgttca |
41457293 |
T |
|
| Q |
394 |
aggattttttccattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatgacatt |
482 |
Q |
| |
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||||| ||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41457292 |
aggatgtttcccattgaacttgaaggaatagaattagatgatacaagggaaggatcaatatgcaaaactgcagatttctccatgacatt |
41457204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 16418971 - 16419100
Alignment:
| Q |
11 |
cacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactattagaggaattactc |
110 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
16418971 |
cacagaaggtaaaggtggaatgatcaaac---ttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactcttacatgaattactc |
16419067 |
T |
|
| Q |
111 |
aacttaacaaatcattataaaccactatgaagc |
143 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| |
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|
| T |
16419068 |
aacttaacaagtcattataaacaactatcaagc |
16419100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 491
Target Start/End: Original strand, 37456113 - 37456199
Alignment:
| Q |
405 |
cattgaacttgaaggaatggaatttgatgatacaatggaaggatcaatatgcaatactgcagatttctccatgacattgtcccagga |
491 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||| ||||||||| ||||| | ||| |||||| |||||||||||||||||||| |
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|
| T |
37456113 |
cattgaacttgatggaaaagaataggatgatacaggggaaggatcggtatgcgttcctgaagatttatccatgacattgtcccagga |
37456199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 18979609 - 18979651
Alignment:
| Q |
309 |
atattatatttttgttcaacaactgtgatttccttgattaatc |
351 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
18979609 |
atattatatttttcatcaacaagtgtgatttccttgattaatc |
18979651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 18988074 - 18988114
Alignment:
| Q |
311 |
attatatttttgttcaacaactgtgatttccttgattaatc |
351 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
18988074 |
attatatttttcatcaacaagtgtgatttccttgattaatc |
18988114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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