View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_13 (Length: 500)
Name: NF1576_high_13
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 108 - 478
Target Start/End: Original strand, 28753061 - 28753432
Alignment:
| Q |
108 |
agtaagattcaaaagtttgaacccctgcatcaggttcttggaaacgcctacactaataaagaatcaaaggatctgtgcaaaatttaccaaactcaattat |
207 |
Q |
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| T |
28753061 |
agtaagattcaaaagtttgaacccctgcattaggttcctggaaacgcctacactaataaagaatcaaaggatctgtacaaaatttaccaaactcaattat |
28753160 |
T |
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| Q |
208 |
tactcaattcctcaacnnnnnnnnnnnn-ttctactaaaaatgataagaaattatctccaaagccaagttaaatgagaaagctgccaaatgtagcttgtt |
306 |
Q |
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| T |
28753161 |
tactcaattcctcaaaaaaaaaaaaaaaattctactaaaaatgataagaaattatctctaaagccaagttaaatgagaaagctgccagatgtagcttgtt |
28753260 |
T |
|
| Q |
307 |
attaatcccagcactatgttggtgtaaattcacttgattagcatgaatcctgaggtgcaaaatcatgacttagggatgatactagaatctaggatttgcg |
406 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28753261 |
attaatcccagcactatgttgttgtaaattcacttgattagcatgaatcctgaggtgcaaaatcatgacttagagatgatactagaatctaggatttgcg |
28753360 |
T |
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| Q |
407 |
aagcattttacattcatatcttgatcaggaannnnnnnccatatcctttgcttctcttg-ccatatatgcaca |
478 |
Q |
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| T |
28753361 |
aagcattttccattcatatcttgatca-gaaattttttccatatcctttgcttctcttgtccatatatgcaca |
28753432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 25049292 - 25049249
Alignment:
| Q |
334 |
attcacttgattagcatgaatcctgaggtgcaaaatcatgactt |
377 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25049292 |
attcacttgattagcatggatcctgaggtgcaaaatcatgactt |
25049249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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