View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_high_16 (Length: 465)

Name: NF1576_high_16
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_high_16
NF1576_high_16
[»] chr7 (3 HSPs)
chr7 (1-451)||(24887742-24888192)
chr7 (215-272)||(12473107-12473164)
chr7 (84-211)||(12473526-12473654)
[»] chr3 (9 HSPs)
chr3 (133-253)||(38684754-38684874)
chr3 (184-272)||(1384762-1384850)
chr3 (101-231)||(37083781-37083912)
chr3 (357-444)||(43822713-43822800)
chr3 (87-243)||(36879046-36879202)
chr3 (153-245)||(9198185-9198277)
chr3 (163-250)||(1163787-1163874)
chr3 (356-422)||(18084842-18084908)
chr3 (88-128)||(7515268-7515308)
[»] chr2 (2 HSPs)
chr2 (101-272)||(27679007-27679179)
chr2 (98-137)||(36626010-36626049)
[»] chr4 (7 HSPs)
chr4 (87-231)||(3535087-3535233)
chr4 (154-231)||(21501605-21501682)
chr4 (143-228)||(39276332-39276417)
chr4 (102-137)||(23686387-23686422)
chr4 (356-422)||(30802465-30802531)
chr4 (200-253)||(22347424-22347477)
chr4 (225-253)||(47987101-47987129)
[»] chr8 (3 HSPs)
chr8 (114-237)||(24523833-24523956)
chr8 (101-242)||(32467766-32467907)
chr8 (133-231)||(41470053-41470151)
[»] chr1 (9 HSPs)
chr1 (87-137)||(5951951-5952001)
chr1 (163-231)||(35926678-35926746)
chr1 (110-177)||(9496747-9496814)
chr1 (164-231)||(15942493-15942560)
chr1 (318-426)||(21516467-21516571)
chr1 (179-248)||(20791959-20792028)
chr1 (200-252)||(10518264-10518316)
chr1 (133-237)||(21516659-21516763)
chr1 (192-272)||(42747633-42747713)
[»] chr5 (3 HSPs)
chr5 (179-272)||(6462365-6462458)
chr5 (215-253)||(13838861-13838899)
chr5 (179-231)||(16869957-16870009)
[»] scaffold0027 (1 HSPs)
scaffold0027 (199-253)||(7952-8006)
[»] scaffold0536 (1 HSPs)
scaffold0536 (103-195)||(4325-4420)
[»] scaffold0040 (1 HSPs)
scaffold0040 (87-231)||(49911-50056)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 24887742 - 24888192
Alignment:
Q  1 tttcttatcggaccaaaggctaccaaacatagggtctgtttggcaagtaacatatttaagttcttnnnnnnntaaaaggtaatatatttgagcttatagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||||    
T  24887742 tttcttatcggaccaaaggctaccaaacatagggtctgtttggcaagtaacatatttgagttcttaaaaaaataaaaggtaatatatttgagcttatagt 24887841  T
Q  101 ttatagtttatgtcttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgt 200  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  24887842 ttatagtttatgtcttataagtttatttgattaaaaaggtatgtttgataatcgtcactttttgacgagcttataacctatttttactagtttatcgtgt 24887941  T
Q  201 tttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaagnnnnnnnt 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24887942 tttttaataagcggattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaagaaaaaaaa 24888041  T
Q  301 tcaatatatttgtttacgtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24888042 tcaatatatttgtttacgtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcacctat 24888141  T
Q  401 caactataacctagtttatcagtcatacgctataagttcatccgctatttg 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24888142 caactataacctagtttatcagtcatacgctataagttcatccgctatttg 24888192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 12473164 - 12473107
Alignment:
Q  215 attcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 272  Q
    ||||||||||||||||| ||||| ||| || |||||||| | |||| |||||||||||    
T  12473164 attcaagtagcttatagcttaaagcttgtagcttatcattttttatctcaattttacc 12473107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 12473654 - 12473526
Alignment:
Q  84 atatttgagcttatagtttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatt 182  Q
    |||||||||||||||  |||||| ||||| |||||||| | |||||| | ||||||| | ||||| ||| ||| | ||| ||| ||| ||||| | ||||    
T  12473654 atatttgagcttataacttatagcttatggcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatt 12473555  T
Q  183 tttactagtttatcgtgttttttaataag 211  Q
    |||||||| || | | ||||||| |||||    
T  12473554 tttactagcttgtagcgtttttttataag 12473526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 38684874 - 38684754
Alignment:
Q  133 aaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagt 232  Q
    ||||||||| ||||| ||| ||||| ||| ||| ||| || |||  |||||||||||| |||| | ||||||| ||||||  |||||||||||||||||     
T  38684874 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagctaattcaagtagcttatagc 38684775  T
Q  233 ttaaaacttataacttatcat 253  Q
    ||||| |||||||||||||||    
T  38684774 ttaaagcttataacttatcat 38684754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 1384850 - 1384762
Alignment:
Q  184 ttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 272  Q
    |||||||||||| ||||| ||| |||||   ||||||||||||||| | ||||| ||||| | ||||||| | ||||||||||||||||    
T  1384850 ttactagtttatagtgttgtttgataaggtaattcaagtagcttatggattaaagcttatgatttatcattttttatgtcaattttacc 1384762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 37083781 - 37083912
Alignment:
Q  101 ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtg 199  Q
    |||||| |||||||||||||| | ||||||||||||| ||   ||| | |||  |||| ||| ||||||| ||||| | |||||||||||| |||| |      
T  37083781 ttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagcttatagca 37083880  T
Q  200 ttttttaataagcagattcaagtagcttatag 231  Q
     ||||||||||||  |||||||||||||||||    
T  37083881 atttttaataagctaattcaagtagcttatag 37083912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 43822713 - 43822800
Alignment:
Q  357 ttttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcagtcatacgctataagttcatccg 444  Q
    ||||| |||||||| |||| | ||| ||||| ||| ||| |||||| |||||| |||| ||||||||||| ||||||||| |||||||    
T  43822713 ttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataagctcatccg 43822800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 36879202 - 36879046
Alignment:
Q  87 tttgagcttatagtttatagtttatgtcttataagtttatttgattaa-aaagatctgtttgataatcgtcaatttttcacgagtttataacctattttt 185  Q
    ||||| |||||||||||||| | |||||||||||||| |||||| ||  ||| | | ||||| |||  |||| ||| ||| | | ||||||| |||||||    
T  36879202 tttgaacttatagtttatagct-atgtcttataagttcatttgactagtaaaaacccgtttggtaactgtcactttctcatgggattataacttattttt 36879104  T
Q  186 actagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttat 243  Q
    ||||| |||| |  |||||| ||||||  |||||||||||||| || ||| |||||||    
T  36879103 actagcttatagcatttttttataagctaattcaagtagcttagagcttataacttat 36879046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 9198277 - 9198185
Alignment:
Q  153 cgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataa 245  Q
    ||||| ||| ||||||| ||| | | |||||||||||| |||| | | ||||| ||||||  ||||||||||||| ||| |||||||||||||    
T  9198277 cgtcactttctcacgagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagtagcttttagcttaaaacttataa 9198185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 1163874 - 1163787
Alignment:
Q  163 tcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttat 250  Q
    ||||||||||||||| ||||||||  |||||||||||||||   ||||||  || ||| ||||||| | ||| || ||||||||||||    
T  1163874 tcacgagtttataacttatttttaagagtttatcgtgttttcctataagctaatccaaatagcttacaatttgaatcttataacttat 1163787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 18084908 - 18084842
Alignment:
Q  356 attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag 422  Q
    |||||| |||||||| |||| | |||||||||| || ||| |||||| |||||| ||||||||||||    
T  18084908 attttaccaaacactgcaaattcaatcagctaacttatccgctatcatctataagctagtttatcag 18084842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 7515308 - 7515268
Alignment:
Q  88 ttgagcttatagtttatagtttatgtcttataagtttattt 128  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
T  7515308 ttgagcttatagtttataacttatgtcttataagttcattt 7515268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 27679007 - 27679179
Alignment:
Q  101 ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtg 199  Q
    |||||| |||||||||||||| | ||||||  ||||| || |||||  ||||  ||||  || ||||||| ||||| | |||||||||||| |||| | |    
T  27679007 ttatagcttatgtcttataagctcatttgagcaaaaaagacctgttcaataacggtcacattctcacgagcttatagcttatttttactagcttatagcg 27679106  T
Q  200 ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 272  Q
    |||||||||||||  ||||||||||||||| | ||||| |||||| ||||||||   |||| |||||||||||    
T  27679107 ttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcattatttatctcaattttacc 27679179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 36626049 - 36626010
Alignment:
Q  98 agtttatagtttatgtcttataagtttatttgattaaaaa 137  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  36626049 agtttatagtttatgtcttataagtttatttgactaaaaa 36626010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 3535087 - 3535233
Alignment:
Q  87 tttgagcttatagtttatagtttat--gtcttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttt 184  Q
    |||||| ||||||||||| ||||||  |||||||||||| |||||| | ||||||  |||||| |||  |||| ||| |  |||||||||| | ||||||    
T  3535087 tttgaggttatagtttattgtttatatgtcttataagttcatttgactgaaaagacatgtttggtaacagtcactttattgcgagtttatagcttatttt 3535186  T
Q  185 tactagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    |||||  |||| | ||||||| ||||||  |||||||||||||||||    
T  3535187 tactaacttatagcgttttttgataagctaattcaagtagcttatag 3535233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 21501605 - 21501682
Alignment:
Q  154 gtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    |||| ||| ||||||| ||||| | ||||||||||||  ||| ||||||||| ||||||  |||||||||||||||||    
T  21501605 gtcactttctcacgagcttatagcttatttttactagcatatagtgttttttgataagctaattcaagtagcttatag 21501682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 39276332 - 39276417
Alignment:
Q  143 gtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagctta 228  Q
    |||||||||  |||| ||| ||||||| ||||||| |||||||||||| ||||   ||||||| ||||||  ||||||||||||||    
T  39276332 gtttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaattcaagtagctta 39276417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 23686387 - 23686422
Alignment:
Q  102 tatagtttatgtcttataagtttatttgattaaaaa 137  Q
    |||||||||| |||||||||||||||||||||||||    
T  23686387 tatagtttatatcttataagtttatttgattaaaaa 23686422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 422
Target Start/End: Original strand, 30802465 - 30802531
Alignment:
Q  356 attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag 422  Q
    |||||| ||||||||||||| | ||| |||||| || ||| |||||| |||||| ||||||||||||    
T  30802465 attttaccaaacactacaaattcaataagctaacttatccgctatcatctataagctagtttatcag 30802531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 22347477 - 22347424
Alignment:
Q  200 ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcat 253  Q
    ||||||||||||   || |||||||||| ||| |||||||||||||||||||||    
T  22347477 ttttttaataagttaatccaagtagcttgtagcttaaaacttataacttatcat 22347424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 47987129 - 47987101
Alignment:
Q  225 cttatagtttaaaacttataacttatcat 253  Q
    |||||||||||||||||||||||||||||    
T  47987129 cttatagtttaaaacttataacttatcat 47987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 24523956 - 24523833
Alignment:
Q  114 cttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagca 213  Q
    |||||||||| |||||||||||||||   ||||| ||| ||||| ||| | || || ||||||| |||||||||||| |||  | | ||||| ||| ||     
T  24523956 cttataagttcatttgattaaaaagactagtttgctaaccgtcactttctaacaagcttataacttatttttactagcttagagaggtttttgatatgct 24523857  T
Q  214 gattcaagtagcttatagtttaaa 237  Q
    |||||||||||||||||| |||||    
T  24523856 gattcaagtagcttatagcttaaa 24523833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 32467907 - 32467766
Alignment:
Q  101 ttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtg 199  Q
    |||||| |||||||||||||| | |||||| | ||||||| ||| ||| ||| ||||| ||  ||  ||| ||||| | |||||||||||| |||| ||     
T  32467907 ttatagcttatgtcttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttactagcttatagtc 32467808  T
Q  200 ttttttaataagcagattcaagtagcttatagtttaaaactta 242  Q
     ||||| ||||||| ||||||||||||||||| ||||| ||||    
T  32467807 gtttttgataagca-attcaagtagcttatagcttaaagctta 32467766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 41470053 - 41470151
Alignment:
Q  133 aaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    ||||||| | ||||| |||  |||| ||| ||||||| ||||||| || ||||||||| | || ||||||||| ||||||  | |||||||||||||||    
T  41470053 aaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttataagctaactcaagtagcttatag 41470151  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 5952001 - 5951951
Alignment:
Q  87 tttgagcttatagtttatagtttatgtcttataagtttatttgattaaaaa 137  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  5952001 tttgagcttataatttaaagtttatgttttataagtttatttgattaaaaa 5951951  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 35926746 - 35926678
Alignment:
Q  163 tcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    ||||||| ||||| | |||||||||||| || | ||||||||| |||||| ||||||||||||||||||    
T  35926746 tcacgagcttatagcttatttttactagcttgtagtgttttttgataagctgattcaagtagcttatag 35926678  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 9496747 - 9496814
Alignment:
Q  110 atgtcttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataac 177  Q
    ||||| |||||| | |||||||||||||||| |||||| |||| |||| ||||||||||| |||||||    
T  9496747 atgtcatataagctcatttgattaaaaagatatgtttggtaattgtcattttttcacgagcttataac 9496814  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 15942560 - 15942493
Alignment:
Q  164 cacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    |||||||||||| | ||  |||||||| |||| ||||||||| ||||||  |||||||||||||||||    
T  15942560 cacgagtttatagcttaactttactaggttattgtgttttttgataagctaattcaagtagcttatag 15942493  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 426
Target Start/End: Complemental strand, 21516571 - 21516467
Alignment:
Q  318 gtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagttt 417  Q
    ||||||||||| ||| |||||||||||||||    || |||||| ||||||| ||||| | |||||||||  || ||| |||||| |||||| |||| ||    
T  21516571 gtcatttcatatttaaaagctatttcaacca----ctaattttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagctt 21516476  T
Q  418 atcagtcat 426  Q
    || ||||||    
T  21516475 ataagtcat 21516467  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 20792028 - 20791959
Alignment:
Q  179 tatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataactt 248  Q
    ||||||||  |||| || ||| ||||| ||||||  ||||||||||||||||| ||||| ||||||||||    
T  20792028 tatttttatgagttcatagtggtttttgataagctaattcaagtagcttatagcttaaatcttataactt 20791959  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 10518264 - 10518316
Alignment:
Q  200 ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatca 252  Q
    |||||| ||||||  ||| ||||||||||||| ||||| ||||||||||||||    
T  10518264 ttttttgataagctaatttaagtagcttatagcttaaagcttataacttatca 10518316  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 21516763 - 21516659
Alignment:
Q  133 aaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagt 232  Q
    |||||||  |||||| |||| |||| ||||||||||| ||||||| || ||| |  || |||| | |||||||| |||||| | ||||||| |||||||     
T  21516763 aaaaagacatgtttggtaattgtcattttttcacgagcttataacttaatttgatgagcttatagcgttttttattaagcaaaatcaagtatcttatagc 21516664  T
Q  233 ttaaa 237  Q
    |||||    
T  21516663 ttaaa 21516659  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 42747633 - 42747713
Alignment:
Q  192 ttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 272  Q
    |||| ||||||||| ||||||  ||||||||| ||||||  ||||| |||||| |||||||  | |||| |||||||||||    
T  42747633 ttatagtgtttttttataagctaattcaagtaacttataacttaaagcttatagcttatcactttttatctcaattttacc 42747713  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 6462458 - 6462365
Alignment:
Q  179 tatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc 272  Q
    |||||||||||| |||| ||| ||||| ||||||  ||||||||||||||||  ||||| |||||| ||||||||   |||| |||||||||||    
T  6462458 tatttttactagcttatagtggtttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcattatttatctcaattttacc 6462365  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 13838899 - 13838861
Alignment:
Q  215 attcaagtagcttatagtttaaaacttataacttatcat 253  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  13838899 attcaagtagcttatagcttaaaacttatagcttatcat 13838861  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 16870009 - 16869957
Alignment:
Q  179 tatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    |||||||||||| |||| | ||||||| ||||||  |||||||||||||||||    
T  16870009 tatttttactagcttatagcgttttttgataagctaattcaagtagcttatag 16869957  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 7952 - 8006
Alignment:
Q  199 gttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcat 253  Q
    ||||||| |||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  7952 gtttttttataagctgattcaagtagcatattgtttaaatcttataacttatcat 8006  T

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Target: scaffold0536 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 4325 - 4420
Alignment:
Q  103 atagtttatgtcttataagtttatttgattaaaaa---gatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttat 195  Q
    ||||||||| || |||||| | |||||| ||||||   ||| | ||||||||  |||| ||| ||| ||||||||||| |||||||||||||||||    
T  4325 atagtttatatcatataagctcatttgactaaaaaacagatttatttgataaatgtcactttatcatgagtttataacttatttttactagtttat 4420  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 50056 - 49911
Alignment:
Q  87 tttgagcttatagtttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctattttt 185  Q
    |||||||||||||||| ||| ||||||||||| |  | |||||| | ||||||| | ||||| |||  |||| ||| ||||||| ||||| | |||||||    
T  50056 tttgagcttatagtttgtagcttatgtcttattaactcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagcttattttt 49957  T
Q  186 actagtttatcgtgttttttaataagcagattcaagtagcttatag 231  Q
    |  || |||| | | ||| | ||||||  |||||||||||||||||    
T  49956 aagagcttatagcggtttgtgataagctaattcaagtagcttatag 49911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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