View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_21 (Length: 419)
Name: NF1576_high_21
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 4895486 - 4895073
Alignment:
| Q |
1 |
aaatctctttcgtttatagtctagacttatcatttgaaacaaacaaattttaatgtatactcagatttatgataaattacacagaattgtggtatatcac |
100 |
Q |
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| T |
4895486 |
aaatctctttcttttatagtctagcctcattatttgaaacaaacaaattttaatgtatactcagatttatgataaattacacagaattgtggtatatcac |
4895387 |
T |
|
| Q |
101 |
tataatttttgtataaacgatattttgaaactttcacaattatattatttgtaattttgttaaactcacgttgattctaaacatgcacaggtgtatattt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
4895386 |
tataatttttatataaacgatattttgaaactttcacaattatattatttgtaattttgttaaactcacattgattctaaacatgcaccggtgtatattt |
4895287 |
T |
|
| Q |
201 |
agattcactttggatagaaccaaatgtcattttagaaactaaaaatttattttggcatcctcaaagaaattttcattaaaattgattttagctttagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4895286 |
agattcactttggatagaaccaaatgtcattttagaaactaaaaatttattttggcatcctcaaagaaattttcattaaaattgattttagctttagaat |
4895187 |
T |
|
| Q |
301 |
ttactctaacatgaagctaaaacttgcaacaacnnnnnnnttaaggaaaaactcttagcttttatcttccaaaacatgatatttttacacttaaaatata |
400 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4895186 |
ttactctaacatgaagctaaaacttgcaacaacaaaaaaattaaggaaaaactcttagcttttatcttccaaaacatgatatttttacacttaaaatata |
4895087 |
T |
|
| Q |
401 |
ttattcatctcact |
414 |
Q |
| |
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|||||||||||||| |
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| T |
4895086 |
ttattcatctcact |
4895073 |
T |
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