View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_high_30 (Length: 341)

Name: NF1576_high_30
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_high_30
NF1576_high_30
[»] chr6 (2 HSPs)
chr6 (9-326)||(33050900-33051217)
chr6 (169-287)||(33032816-33032936)
[»] chr4 (2 HSPs)
chr4 (196-290)||(8264038-8264132)
chr4 (196-290)||(8277456-8277550)
[»] chr1 (1 HSPs)
chr1 (217-287)||(9901029-9901098)
[»] chr7 (1 HSPs)
chr7 (202-287)||(7975171-7975255)
[»] chr5 (1 HSPs)
chr5 (202-287)||(13838155-13838239)
[»] chr2 (1 HSPs)
chr2 (202-287)||(26543712-26543796)
[»] chr3 (1 HSPs)
chr3 (202-281)||(1293814-1293892)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 33050900 - 33051217
Alignment:
Q  9 attattcttctgtaattttaccaatgtttcttaggtatatccaagttggatttaatttagtgtctttatgtttcaaatttatcattgttggttcaaactt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33050900 attattcttctgtaattttaccaatgtttcttaggtatatccaagttggatttaatttagtgtctttatgtttcaaatttatcattgttggttcaaactt 33050999  T
Q  109 gtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattttatgggctgtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051000 gtgtgttatgtacggtgtatcaatgttgcattgtcctatagttttttctcagattttttctcaattacatgttactttgaaatgtattttatgggctgtg 33051099  T
Q  209 atgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcccttcattatcacaccctttga 308  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33051100 atgagtcatagagatagtcatgcaccactctcatgtttcaatgctgataattttctcatacccaatatttttctgagcccttcattatcacaccctttga 33051199  T
Q  309 gtttttgcagctatatct 326  Q
    ||||||||||||||||||    
T  33051200 gtttttgcagctatatct 33051217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 33032816 - 33032936
Alignment:
Q  169 tcaattacatgttactttgaaat--gtattttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctca 266  Q
    |||||||||| ||||| |||| |  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33032816 tcaattacatattactctgaattttgtattttattggctatgatgagtcatagagatagtcatgcaccactctgatgtttccgtgctgataattttctca 33032915  T
Q  267 tacccaatatttttctgagcc 287  Q
    |||||| ||||||||||||||    
T  33032916 tacccattatttttctgagcc 33032936  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 8264038 - 8264132
Alignment:
Q  196 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt 290  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||    
T  8264038 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt 8264132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 8277456 - 8277550
Alignment:
Q  196 tttatgggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagccctt 290  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||    
T  8277456 tttatgggctatgatgaatcatagagatagtcatgcaccactctgatattccagtgctgataattttctcatacccattatttttctgagccctt 8277550  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 9901098 - 9901029
Alignment:
Q  217 tagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 287  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||| ||||||||||||||    
T  9901098 tagagatagtcatgcaccactctgat-ttcctgtgctgataattttctcatacccattatttttctgagcc 9901029  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 7975171 - 7975255
Alignment:
Q  202 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 287  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  7975171 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 7975255  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 13838239 - 13838155
Alignment:
Q  202 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 287  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  13838239 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 13838155  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 26543796 - 26543712
Alignment:
Q  202 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttctgagcc 287  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| |||||||| |||||    
T  26543796 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttcagagcc 26543712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 1293892 - 1293814
Alignment:
Q  202 ggctgtgatgagtcatagagatagtcatgcaccactctgatgtttcaatgctgataattttctcatacccaatatttttc 281  Q
    |||| |||||| |||||||||||||||||||||||| |||| || |  ||||||||| ||||| ||||||| ||||||||    
T  1293892 ggctatgatgaatcatagagatagtcatgcaccactttgat-ttcctgtgctgataactttcttatacccattatttttc 1293814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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