View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_35 (Length: 315)
Name: NF1576_high_35
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 35549608 - 35549326
Alignment:
| Q |
18 |
catgtgggccattaatcccagcattacacttacacataagagcttaattattaataaaactaccatgtagtaaattattaagaatagagatataaattat |
117 |
Q |
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| T |
35549608 |
catgtgggccattaatcctagcattacacttacacataagagcttaattattaataaaagtaccatgtagtaaattattaagaatagagatataaattat |
35549509 |
T |
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| Q |
118 |
aatgaaagtgattaaaaaagtggcttactgatgcaacaaaaacagttccatctttgtcatcatagatgataaatccaaaactaccatcaagttctttgag |
217 |
Q |
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| T |
35549508 |
aatgaaagtgattaaaaaagtggcttactgatgcaacaaaaacagttccatctttgtcatcatagatgataaatccaaaactaccatcaagttctttgag |
35549409 |
T |
|
| Q |
218 |
gacttgatctgcagggaatggacccctgtcacgaagtgtcctataggcttcaatgatgaaatttgcctcattggttccctttg |
300 |
Q |
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| T |
35549408 |
gacttgatctgcagggaatggacccctgtcacgaagtgtcctataagcttcaatgatgaaatttgcctcattggttccctttg |
35549326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 128 - 300
Target Start/End: Complemental strand, 3489278 - 3489106
Alignment:
| Q |
128 |
attaaaaaagtggcttactgatgcaacaaaaacagttccatctttgtcatcatagatgataaatccaaaactaccatcaagttctttgaggacttgatct |
227 |
Q |
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||||| |||||| || || |||||| ||||||||||||| || || | |||||||| | |||| ||||||| || |||||| |||||||||||||||| |
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| T |
3489278 |
attaagaaagtgactcacagatgcagcaaaaacagttccgtccttatggtcatagatcacaaatgcaaaactgccttcaagtcctttgaggacttgatca |
3489179 |
T |
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| Q |
228 |
gcagggaatggacccctgtcacgaagtgtcctataggcttcaatgatgaaatttgcctcattggttccctttg |
300 |
Q |
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| T |
3489178 |
gcagggtatggacccctgtcacgaagtgtccgatacgcttcaataataaacatagcctcattgcctccctttg |
3489106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 271
Target Start/End: Complemental strand, 33569083 - 33569005
Alignment:
| Q |
193 |
caaaactaccatcaagttctttgaggacttgatctgcagggaatggacccctgtcacgaagtgtcctataggcttcaat |
271 |
Q |
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||||||| ||||||||||| |||| |||||||||| || ||||||| | |||||| ||||||||||| |||||||| |
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| T |
33569083 |
caaaactgccatcaagttccttgacaacttgatctggtggatatggaccacggtcacggagtgtcctataagcttcaat |
33569005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 5946249 - 5946180
Alignment:
| Q |
193 |
caaaactaccatcaagttctttgaggacttgatctgcagggaatggacccctgtcacgaagtgtcctata |
262 |
Q |
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||||||||||||||||||| || |||||||||| || ||||||| |||||||||||||||||||| |
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| T |
5946249 |
caaaactaccatcaagttccttagcaacttgatctggtggatatggaccactgtcacgaagtgtcctata |
5946180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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