View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_high_37 (Length: 302)

Name: NF1576_high_37
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_high_37
NF1576_high_37
[»] chr1 (10 HSPs)
chr1 (20-292)||(15011193-15011465)
chr1 (20-288)||(15017312-15017580)
chr1 (20-292)||(15037213-15037484)
chr1 (20-292)||(15002300-15002572)
chr1 (20-292)||(15032651-15032917)
chr1 (20-292)||(14532392-14532664)
chr1 (20-292)||(14522271-14522543)
chr1 (228-292)||(15040937-15041001)
chr1 (20-82)||(14483154-14483216)
chr1 (35-127)||(14504340-14504432)
[»] scaffold0400 (2 HSPs)
scaffold0400 (20-292)||(12972-13253)
scaffold0400 (28-292)||(6684-6945)
[»] scaffold0365 (2 HSPs)
scaffold0365 (20-292)||(13615-13896)
scaffold0365 (28-292)||(7328-7589)
[»] chr8 (2 HSPs)
chr8 (20-127)||(17027247-17027354)
chr8 (20-127)||(17557739-17557846)
[»] chr7 (2 HSPs)
chr7 (20-80)||(15664889-15664949)
chr7 (20-80)||(15676723-15676783)
[»] scaffold0289 (2 HSPs)
scaffold0289 (20-66)||(5215-5261)
scaffold0289 (20-66)||(14048-14094)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 15011465 - 15011193
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  15011465 gcttcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgc 15011366  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    |||||||| |||| |||| |||||| |||||||| |||||| |||||||||  || || ||||||||||||| || ||||||| |||||||||| |||||    
T  15011365 ttgaagttcgacacaaaaggtatgagatcccataaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagt 15011266  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    |||||||| |||||| |||||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15011265 cttatgataatgaaatttgccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg 15011193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 15017580 - 15017312
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15017580 gcttcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgc 15017481  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    |||||||| ||||||||| |||||| |||||||| |||||| |||||||||  || |||||||||||||| | || ||||||| || ||||||| || ||    
T  15017480 ttgaagttcgacaaaaaaagtatgagatcccataaacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgtttgt 15017381  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcc 288  Q
    ||||||||||||||| |||||||||||| ||||||||||||  || ||||||| |||||||||||||||    
T  15017380 cttatgattatgaaacttgccaccagatattgagcaaggctctaggccagagatattaccacacaagcc 15017312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 15037484 - 15037213
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  15037484 gcttcgataatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgc 15037385  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    |||||||| ||| ||| | |||||| |||||||| |||||  |||||||||| || || || |||||||||| || ||||||| |||||||||| |||||    
T  15037384 ttgaagttcgac-aaagaggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagt 15037286  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
     |||||| |||||||| ||||||| ||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15037285 attatgactatgaaaggtgccacccgatgttgagcaaggctctaggccagagacattaccacataagcctttg 15037213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 15002572 - 15002300
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  15002572 gcttcgattatgttctcgtacaccatttttccatcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgc 15002473  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    |||||||| ||||||||| |||||| |||||||| |||||  |||||||||| || || || |||||||||| || ||||||| |||||||||| |||||    
T  15002472 ttgaagttcgacaaaaaaggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagt 15002373  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
     |||||| |||||||| ||||||| ||||||||||||||||  || ||||| |||||||||||||||||||||    
T  15002372 attatgactatgaaaggtgccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg 15002300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 15032917 - 15032651
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||    
T  15032917 gcttcgattatgttctcgtacaccattttgccatcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgc 15032818  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    ||||| || |||| |||| |||||| |||      |||||| |||||||||  || || ||||||||||||| || ||||||| |||||||||| |||||    
T  15032817 ttgaaattcgacacaaaaggtatgagatc------acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagt 15032724  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    ||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  15032723 cttatgattatgaaatttgccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg 15032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 14532392 - 14532664
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||||||| |||| ||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |||  | |||| |||||||||||    
T  14532392 gcttcgataatggtctcgtacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgtgc 14532491  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    |||||||||||||||||| |||||| ||||| ||  |||   |||| ||||| || | ||||||||||||||||||||||||| ||||||| ||  ||||    
T  14532492 ttgaagtttgacaaaaaaggtatgagatcccgtaagcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgctagt 14532591  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    ||||||| |||||||||||||||| ||||||||||||  |   || |||||||||||||||||||||||||||    
T  14532592 cttatgactatgaaagttgccacctgatgttgagcaacacactaggccagagacattaccacacaagcctttg 14532664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 14522271 - 14522543
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| || ||||||||||||||||| || |||||||||||||||  ||||||||||||| |||||||||||| | || |||||| |||||||||||    
T  14522271 gcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgc 14522370  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    |||||||   ||||||   |||||| |||||||| |||| | |||||||||| |  || ||||||||||||| |||||||||| |||||||||| |||||    
T  14522371 ttgaagtgcaacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagt 14522470  T
Q  220 cttatgattatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
     |||||| |||| ||||| ||||| ||||||||||||||||  || |||||||||||||| ||||||||||||    
T  14522471 tttatgactatggaagtttccacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg 14522543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 15041001 - 15040937
Alignment:
Q  228 tatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    ||||||||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||    
T  15041001 tatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttg 15040937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 14483216 - 14483154
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttca 82  Q
    ||||||||||||||||| ||||||||||| |  ||||| |||||||||  |||||||||||||    
T  14483216 gcttcgataatgttctcgtacaccatttttcaatcaaaactccatattgaaaatagattttca 14483154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 14504432 - 14504340
Alignment:
Q  35 tcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 127  Q
    |||||||||||||| || ||||| |||||||||  ||||||||||||| | ||  |||||| ||||  ||||  |||||||||| | ||||||    
T  14504432 tcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgtgttcgaagtt 14504340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 13253 - 12972
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| ||||||||||| |||||||| || |||||||||||| || |||| ||||||||| |||||||||||| || |||||||| ||||||| | |    
T  13253 gcttcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttc 13154  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    ||||||| ||  | |||| |||||| | |||||| |||| | |||||||||| || |  || |||||||||||||||||||| ||||||||||| |||||    
T  13153 ttgaagtgtggtagaaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagt 13054  T
Q  220 cttatga---------ttatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    |||||||         ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13053 cttatgactatgaaagttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 6945 - 6684
Alignment:
Q  28 aatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 127  Q
    ||||||||||||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||||||||||||    
T  6945 aatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagtt 6846  T
Q  128 tgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgat 227  Q
     |||| |||| | |||| |  ||||| | || | ||||| |||| || |  |||||||||| ||||||||| | | ||||||| |  ||||||||||||     
T  6845 cgacataaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgac 6746  T
Q  228 tatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    |||||||||| |||||  |||||||||||||||  |  ||||||   ||||||||||||||||||    
T  6745 tatgaaagttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 13896 - 13615
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    |||||||| ||||||||||| |||||||| || |||||||||||| || |||| ||||||||| |||||||||||| || |||||||| ||||||| | |    
T  13896 gcttcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttc 13797  T
Q  120 ttgaagtttgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagt 219  Q
    ||||||| ||  | |||| |||||| | |||||| |||| | |||||||||| || |  || |||||||||||||||||||| ||||||||||| |||||    
T  13796 ttgaagtgtggtagaaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagt 13697  T
Q  220 cttatga---------ttatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    |||||||         ||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13696 cttatgactatgaaagttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 13615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 292
Target Start/End: Complemental strand, 7589 - 7328
Alignment:
Q  28 aatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgcttgaagtt 127  Q
    ||||||||||||||||| ||| || ||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||||||||||||    
T  7589 aatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagtt 7490  T
Q  128 tgacaaaaaatgtatgatatcccatatacaattgatgctaacaaaagtggacctagagtgaggggtaaaactagctccaaaattttattagtcttatgat 227  Q
     |||| |||| | |||| |  ||||| | || | ||||| |||| || |  |||||||||| ||||||||| | | ||||||| |  ||||||||||||     
T  7489 cgacataaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgac 7390  T
Q  228 tatgaaagttgccaccagatgttgagcaaggctgcagaccagagacattaccacacaagcctttg 292  Q
    |||||||||| |||||  |||||||||||||||  |  ||||||   ||||||||||||||||||    
T  7389 tatgaaagttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 17027354 - 17027247
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||| ||| ||||||||| || ||  ||||||| |||||||||      
T  17027354 gcttcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtca 17027255  T
Q  120 ttgaagtt 127  Q
    ||||||||    
T  17027254 ttgaagtt 17027247  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 17557846 - 17557739
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgttttcttttgtgc 119  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||| ||| ||||||||| || ||  ||||||| |||||||||      
T  17557846 gcttcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtca 17557747  T
Q  120 ttgaagtt 127  Q
    ||||||||    
T  17557746 ttgaagtt 17557739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 15664889 - 15664949
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagatttt 80  Q
    ||||| ||||||||||||||||||||||| || ||||| |||||||||  ||||| |||||    
T  15664889 gcttcaataatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttt 15664949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 15676723 - 15676783
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatatttcaaatagatttt 80  Q
    ||||| || |||||||||||||||||||| || ||||| |||||||||  ||||| |||||    
T  15676723 gcttcaattatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttt 15676783  T

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Target: scaffold0289 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 5215 - 5261
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatat 66  Q
    ||||| ||||||||||||||||||||||| || ||||| ||||||||    
T  5215 gcttcaataatgttctcatacaccattttcccatcaaaactccatat 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 14048 - 14094
Alignment:
Q  20 gcttcgataatgttctcatacaccattttgccgtcaaagctccatat 66  Q
    ||||| ||||||||||||||||||||||| || ||||| ||||||||    
T  14048 gcttcaataatgttctcatacaccattttcccatcaaaactccatat 14094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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