View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_4 (Length: 748)
Name: NF1576_high_4
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1576_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 4e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 259 - 428
Target Start/End: Original strand, 5567199 - 5567370
Alignment:
Q |
259 |
atacatgagtcttttagattatattggtcatagctt--tgtgcttgacaaggaataatagaaattgagtgtttcatagatcaatcatatgagagtgttgg |
356 |
Q |
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T |
5567199 |
atacatgaatcttttagattatataggtcatagcttggtgtggttgaaaaggaataatagaaatcgagtgtttcatagatcaatcatatgagagtgttgg |
5567298 |
T |
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Q |
357 |
aagaaagggtttgatttgtgaaatttgggaaggaatagagaagggaagagagaagaaattagagagtttatg |
428 |
Q |
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T |
5567299 |
aagaaagggtttgatttgtgaaatttgggaaggaatagagaagggaagagagaagaaattagatagtttatg |
5567370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 600 - 728
Target Start/End: Original strand, 5567909 - 5568037
Alignment:
Q |
600 |
gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgactttgtc |
699 |
Q |
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T |
5567909 |
gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgacattgtc |
5568008 |
T |
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Q |
700 |
attgcatttgcaatttaaaacatttgtct |
728 |
Q |
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T |
5568009 |
attgcatttgcaatttaaaacatttgtct |
5568037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 421 - 539
Target Start/End: Original strand, 5567729 - 5567847
Alignment:
Q |
421 |
agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctagttatagcctctattacttgctatgc |
520 |
Q |
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T |
5567729 |
agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctacttatagcctctattacttgctatgc |
5567828 |
T |
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Q |
521 |
aagttacttgttgttcaag |
539 |
Q |
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T |
5567829 |
aagttacttgttgttcaag |
5567847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 5571977 - 5572077
Alignment:
Q |
19 |
gtttgtacttagaaaacttttgtgtaacaactgacaagtttacattttgtctggacgtgcttagtttaacaggtaaatatatataaattgattaggtgaa |
118 |
Q |
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T |
5571977 |
gtttgtactaagaaaacttttgtgtaacaactgagaagtttacattttgtcgggacgtgcttagtttaataggtaa--atatataaattgattaggttaa |
5572074 |
T |
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Q |
119 |
ata |
121 |
Q |
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||| |
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T |
5572075 |
ata |
5572077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 5584121 - 5584182
Alignment:
Q |
181 |
aaatcttgttatgtctatttatagcttgtgtgg---atgaattagttttctgttagtcagtt |
239 |
Q |
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T |
5584121 |
aaatcttgttatgtctatttagagcatgtgtggattatcaattagttttctgttagttagtt |
5584182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 604 - 667
Target Start/End: Complemental strand, 21549327 - 21549260
Alignment:
Q |
604 |
tattcttaacactcttccttaattcatgtttgttgaatt----caccatgtccatcatgcttctcaat |
667 |
Q |
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T |
21549327 |
tattcttaacactcttccttaattcatgttttttgaattcacccaccatgcccatcatgcttctcaat |
21549260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 610 - 654
Target Start/End: Complemental strand, 4928077 - 4928033
Alignment:
Q |
610 |
taacactcttccttaattcatgtttgttgaattcaccatgtccat |
654 |
Q |
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T |
4928077 |
taacactcttccttaattcatgtttgttgaattcaccatgcccat |
4928033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 663
Target Start/End: Original strand, 24413070 - 24413122
Alignment:
Q |
611 |
aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct |
663 |
Q |
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T |
24413070 |
aacactcttccttaattcatgtttgctgaatccaccatgcccatcattcttct |
24413122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 663
Target Start/End: Complemental strand, 8531613 - 8531561
Alignment:
Q |
611 |
aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct |
663 |
Q |
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T |
8531613 |
aacactcttccttaattcatgtttgttgaatcaaccatgcccatcattcttct |
8531561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 462
Target Start/End: Original strand, 26344931 - 26344976
Alignment:
Q |
417 |
agagagtttatgagggaaattgaacttgtatattattttggaaaat |
462 |
Q |
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T |
26344931 |
agagagtttatgggagaaattgagcttgtatattattttggaaaat |
26344976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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