View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_40 (Length: 286)
Name: NF1576_high_40
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42269208 - 42268930
Alignment:
| Q |
1 |
aattgatctctagattccaccaaaaagtttcgacttatagaaaaattcgctcttagtaagttttgataaaacattacacgnnnnnnnccttttactatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||| | || |||||||||||||||||||||||| ||||||||||||| |
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| T |
42269208 |
aattgatctctagattccaccaaaaaatttcgacttctagaaaaattcgatttttgtaagttttgataaaacattacacatttttttccttttactatta |
42269109 |
T |
|
| Q |
101 |
ttattataaaattcaatcttttgctaaaa--------tgtccaactttaaacctttttaaggaggttcatattagacaactcttagnnnnnnnnagttgt |
192 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
42269108 |
ttattataaaattcaatcttttgctaaaaatagtaaatgtccaactttaaaccttttttaggaggttcatattagacaactcttagtttttttg-gttgt |
42269010 |
T |
|
| Q |
193 |
gttaaccctctagttctcaatggaaatagtcttgataattcggagttcgatcagaagataagtaaagtttggtcaataat |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
42269009 |
gttaaccctctagttctcaatggaaatagtcttgataatttggagttcgatcagaagataagtaaagtttggttaataat |
42268930 |
T |
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