View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_41 (Length: 282)
Name: NF1576_high_41
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 19596724 - 19596852
Alignment:
| Q |
142 |
tgaagaaatgaacatttc-catgatcatatctcctgaaaatgtaactaatatgtaaatttgaacatctttattcactcctcaatcttcttcattcattcc |
240 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
19596724 |
tgaagaaatgaacattttgcatgatcatatctcctgaaaatgtaactaatatgtaaatttgaatatctttattcactccttaatcttcttcattcattcc |
19596823 |
T |
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| Q |
241 |
tcaatcttctttgaattgtctgatgatgt |
269 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
19596824 |
tcaatcttctttgaattgtctgataatgt |
19596852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19596623 - 19596667
Alignment:
| Q |
1 |
attactgatcaaccatttatttattcatgaacaaatacagtacaa |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19596623 |
attactgatcaaccatttatttattcatgaacaaatacaatacaa |
19596667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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