View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_43 (Length: 281)
Name: NF1576_high_43
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 3101548 - 3101289
Alignment:
| Q |
21 |
aaaataacatttgagttgtttgatggtgttggtttgaattcttgaatgtaatctcttaaaaattcagattcaatttttgctggtgcgaaaatagttgga- |
119 |
Q |
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| T |
3101548 |
aaaataacatttgagttgtttgatggtgttggtttgaattcttgggtgtaatctcttaaaatttcagattcaatttttgctgatgccaaaatagctagac |
3101449 |
T |
|
| Q |
120 |
-------tataaaattta-ttcgaattttaaacgagactcttataaataaacggtaaaatttgaacccttgaattaataataatcattagaaccgtacaa |
211 |
Q |
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|| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3101448 |
taatccatacaaaattttgttcgaattttaaacgagactcttacaaataaatggtaaaatttgaacccttgaattaataataatcattagaaccgtacaa |
3101349 |
T |
|
| Q |
212 |
gaaaaaagttagttnnnnnnnngatgatacacgtgacattaataatcaatagtagtataatc |
273 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
3101348 |
gaaaaaagttagtt--aaaaaagatgatacacgtgacattaataatcaatagtaatataatc |
3101289 |
T |
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