View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_44 (Length: 276)
Name: NF1576_high_44
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_44 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 42279382 - 42279114
Alignment:
| Q |
5 |
tgtccaagaatatatttatgtacgatctagatacaatttggttttttattaatttttctttcttctgaagtcaaattaatagttataagtggtgtatttt |
104 |
Q |
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| T |
42279382 |
tgtccaacaacatatttatgtacgatctagatacaatttggttttttattagtttttctttcttctgaagtcaaattaatagttataagtggtgtatttt |
42279283 |
T |
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| Q |
105 |
tgtacatcgtcaannnnnnnnagttgcttaaatggataaaaattccacttcgagcaatctggagtaattggattttaaccctcacattcaccagttcggg |
204 |
Q |
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||||||||||||| ||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
42279282 |
tgtacatcgtcaattttt---agttgctcaaatgggtaaaaattccacttcgagtaatctgaagtaattggattttaaccctcacattccctagttcggg |
42279186 |
T |
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| Q |
205 |
aaagcattattcttgattttggtttgagagccgaattcgtcacaactcccacctacagttttcatacttcat |
276 |
Q |
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| T |
42279185 |
aaagcattattcttgattttggtttgagagccgaattcgtcacaactcccacatacagttttcatacttcat |
42279114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 28083178 - 28083120
Alignment:
| Q |
45 |
gttttttattaatttttctttcttctgaagtcaaattaatagttataagtggtgtattttt |
105 |
Q |
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| T |
28083178 |
gttttttattaatttttttttcttc--aagtcaaatcaataattataaatgatgtattttt |
28083120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 28640618 - 28640573
Alignment:
| Q |
47 |
tttttattaatttttctttcttctgaagtcaaattaatagttataa |
92 |
Q |
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| T |
28640618 |
tttttattagtttttctctcttctaaagtcaaatcaatagttataa |
28640573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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