View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_47 (Length: 262)
Name: NF1576_high_47
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 16585708 - 16585456
Alignment:
| Q |
1 |
cacataaatcaacagacacatttatagaaatttctttttccactgatatattttcgtaaacattttctcaaaatagtccaaaatattaagttaaaatatt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16585708 |
cacataaatcaacatacacatttatagaaatttctttttccactgatatattttcgtaaacattttctcaaaatagtccaaaatattaagttaaaatatg |
16585609 |
T |
|
| Q |
101 |
tttgacaannnnnnnacatagaatcatacgtttatacaacatttaccaggaactagggtcagtcaacctccacagatttgcagacaaatttgatttaaaa |
200 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16585608 |
tttgacaatttttttacatagaatgatacgtttatacaacatttaccaggaaccagggtcagtcaacctccacagatttgcagacaaatttgatttaaaa |
16585509 |
T |
|
| Q |
201 |
tca--------attaggtactcacaacagccaacaaaaatttccgccattcat |
245 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16585508 |
tcaattagtacattaggtactcacaacagccaacaaaaatttccgacattcat |
16585456 |
T |
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