View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_high_48 (Length: 260)
Name: NF1576_high_48
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1576_high_48 |
| |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 27643059 - 27643261
Alignment:
Q |
34 |
aatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
133 |
Q |
|
|
|||||||||||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
27643059 |
aatgcaattcaatgtttgtagacgggtatgagtttcatctccctcaacttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacc |
27643158 |
T |
|
Q |
134 |
catagttcttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtctt |
233 |
Q |
|
|
|||| | |||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
27643159 |
cataatccttacttttgttcatactagatacatgttgaaactgaaaccgcagaactggcaccgttgcttcaaaggaagcaatttcctccaatttggtctt |
27643258 |
T |
|
Q |
234 |
atg |
236 |
Q |
|
|
||| |
|
|
T |
27643259 |
atg |
27643261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 50247819 - 50247630
Alignment:
Q |
47 |
gttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagttcttact |
146 |
Q |
|
|
|||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| || |||||||| | ||||| |
|
|
T |
50247819 |
gttggtaggagggtataagtttcatctccctcagcttagccacccagagtttgatactcttaaacgtatcagcatactctaaaaacccataatctttact |
50247720 |
T |
|
Q |
147 |
cttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatg |
236 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| | || ||||| | ||||||||| |||||||||||| ||| ||||||||||| |
|
|
T |
50247719 |
cttgttcatactagatacatgttgaaactcaaaccgtacaactggcaccatggcttcaaagcaagcaatttccttcaacttggtcttatg |
50247630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 27646243 - 27646328
Alignment:
Q |
12 |
gtcgaagaatattattacagataatgcaattcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatc |
97 |
Q |
|
|
|||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
27646243 |
gtcgaacaatattattacagataatgcaattcaatgttggtagaagggtatgagtttcatctccctcagcttagccacccagaatc |
27646328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 50254962 - 50254767
Alignment:
Q |
41 |
ttcaacgttggtagaaggatatgagtttcatctccctcagcttagccacccagaatctgatactcttaaacgtatctgcatactcaaagaacccatagtt |
140 |
Q |
|
|
||||| ||| ||||| || |||||| ||||||||||||||||| |||||||||| | | ||| |||||||| || ||||||||||| ||| |||| || |
|
|
T |
50254962 |
ttcaatgttcgtagatgggtatgagattcatctccctcagcttcatcacccagaatttcacactattaaacgtctcagcatactcaaaaaactcataatt |
50254863 |
T |
|
Q |
141 |
cttactcttgttcatactagatacatgttgaaactcaaaccgcagaaatggcagtgttgcttcaaaggaagcaatttcctccaatttggtcttatg |
236 |
Q |
|
|
|||||||| ||||||||||||||| ||||||||||||| || | || ||||| || ||||| |||||||||||||||||||||||||||| |
|
|
T |
50254862 |
tttactcttattcatactagatacaagttgaaactcaaatcgaaaaactggcaccaaggcatcaaaacaagcaatttcctccaatttggtcttatg |
50254767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 18046 times since January 2019
Visitors: 3791