View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_58 (Length: 231)
Name: NF1576_high_58
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 42278745 - 42278962
Alignment:
| Q |
1 |
atttggataaaatttccacaggttgtgatgttcctggccttgatgccatccatatacctgctccaattactagtatagatgctaaaagtatgaacaattt |
100 |
Q |
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| T |
42278745 |
atttggataaaatttccacaggttgtgatgttcctggccttgatgccatccatatacctgctccaattactagtatagatgctaaaagtatgaacaattt |
42278844 |
T |
|
| Q |
101 |
caagaacccgatcactgtgttgttgaacttatacacattgatcacttgtaaagttgcattactttaatatatttccgaaaagaacaaatacacaagagta |
200 |
Q |
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| T |
42278845 |
caagaacccgatcactgtgttgttgaacttatacacattgatcacttgtaaagttgcattactttaatacatttccgaaaagaacaaatacacaatagta |
42278944 |
T |
|
| Q |
201 |
tcccaagaaaatcaatta |
218 |
Q |
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||||||| |||||||||| |
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| T |
42278945 |
tcccaagtaaatcaatta |
42278962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 42969891 - 42969982
Alignment:
| Q |
44 |
tgccatccatatacctgctccaattactagtatagatgctaaaagtatgaacaatttcaagaacccgatcactgtgttgttgaacttataca |
135 |
Q |
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| T |
42969891 |
tgccatccatagtcctgctccaattattggtatggatgctaaaagtgttaacaagtttaagagccctatcactgtgttactgaacctataca |
42969982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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