View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_high_6 (Length: 722)

Name: NF1576_high_6
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_high_6
NF1576_high_6
[»] chr6 (3 HSPs)
chr6 (223-632)||(28717282-28717698)
chr6 (25-194)||(28717084-28717253)
chr6 (26-132)||(28716952-28717058)
[»] chr8 (1 HSPs)
chr8 (524-705)||(9197671-9197851)
[»] chr3 (12 HSPs)
chr3 (521-705)||(20213383-20213566)
chr3 (521-705)||(40872164-40872347)
chr3 (440-515)||(22197182-22197257)
chr3 (440-515)||(22194434-22194509)
chr3 (240-278)||(22196893-22196931)
chr3 (240-278)||(22194145-22194183)
chr3 (318-382)||(22197044-22197109)
chr3 (318-362)||(22194295-22194339)
chr3 (521-551)||(13349433-13349463)
chr3 (517-551)||(23706808-23706842)
chr3 (517-551)||(23725264-23725298)
chr3 (517-551)||(23743720-23743754)
[»] chr2 (1 HSPs)
chr2 (537-705)||(20431738-20431905)
[»] chr7 (1 HSPs)
chr7 (537-676)||(9749924-9750059)
[»] chr1 (1 HSPs)
chr1 (606-705)||(45818533-45818632)


Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 223 - 632
Target Start/End: Original strand, 28717282 - 28717698
Alignment:
Q  223 gatatgacgtggaggtaatgtttgcttattatggaatgaatatattcaaagtccaagactttcgtcaagtcaatttcttcagccaactgcctgcgagaaa 322  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28717282 gatatgacgtagaggtaatgtttgcttattatggaatgaatatattcaaagtccaagactttcgtcaagtcaatttcttcagccaactgcctgcgagaaa 28717381  T
Q  323 caatctggttaagtcaactatacttgcttgaaaatattaaatattggtaacaactattacatattcttttattaat--------gtatttgtttttaatg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  28717382 caatctggttaagtcaactatacttgcttgaaaatattaaatattggtaacaactattacatattcttttattaatatattaatgtatttgtttttaatg 28717481  T
Q  415 ttcttacagagaaattaccttgggaactttggtcaatccctccaacataatatatgtcaaactttaatgttatgtggagataatggagatcatcagcttt 514  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28717482 ttcttacagagaaattaccttggga-ctttggtcaatacctccaacataatatatgtcaaactttaatgttatgtggagataatggagatcatcagcttt 28717580  T
Q  515 tagacacaggtgtcaacaaattcgttgacaccaaatcctgaccatccatatcatttgatctgaaagctagaaattattcattaaacaaacccatgtgatt 614  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  28717581 tagacacaggtatcaacgaattcgttgacaccaaatcctgaccatccatatcatttgatctaaaagccagaaattattcattaaacaaacccatgtgatt 28717680  T
Q  615 attgtgtatgttcgccca 632  Q
    ||||||||||||||||||    
T  28717681 attgtgtatgttcgccca 28717698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 28717084 - 28717253
Alignment:
Q  25 atatatatgatcaaatggaaattattttgtatcttacattaaactttcagttaatcttatatgactgaagctttttgatatttttagttttctgtaattt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  28717084 atatatatgatcaaatggaaattattttgtatcttacattaaactttcagttaatcttatatgactgaagcttttagatatttttagttttctgtaaatt 28717183  T
Q  125 gaaagtgagaaattatctccacagtaaactgtgtgcctttcacattagaagtttgaagcgaaatgaaact 194  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  28717184 gaaagtgagaaattatctccacagaaaactgtgtgcctttcacattagaagtttgaagcaaaatgaaact 28717253  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 28716952 - 28717058
Alignment:
Q  26 tatatatgatcaaatggaaattattttgtatcttacattaaactttcagttaatcttatatgactgaagctttttgatatttttagttttctgtaatttg 125  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||    
T  28716952 tatatataatcaaatggaaattattatgtatcttacattaaactttcagttaatcttatatgactaaagcttttagatatttttagttttctgtaaattg 28717051  T
Q  126 aaagtga 132  Q
    |||||||    
T  28717052 aaagtga 28717058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 524 - 705
Target Start/End: Complemental strand, 9197851 - 9197671
Alignment:
Q  524 gtgtcaacaaattcgttgacaccaaatcctgaccatccatatcatttgatctgaaagctagaaattattcattaaacaaacccatgtgattattgtgtat 623  Q
    |||||||| ||||||||||||||||||||| ||| || |||||||||||||| ||||| |||||||||||||||||||  | |||||||||||||||| |    
T  9197851 gtgtcaacgaattcgttgacaccaaatcctaaccgtctatatcatttgatctaaaagccagaaattattcattaaacag-ctcatgtgattattgtgtct 9197753  T
Q  624 gttcgcccacgtgatctccttctacatgttgggtttcaatttgtctctctcatcgtaactctgtcactgattttcacccttt 705  Q
    ||| |||||| |||| || |||| |||||||||||||| |||||||||||||| ||| |||  |||||||||||||||||||    
T  9197752 gttagcccacatgatttctttcttcatgttgggtttcagtttgtctctctcattgtagctccatcactgattttcacccttt 9197671  T

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Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 521 - 705
Target Start/End: Complemental strand, 20213566 - 20213383
Alignment:
Q  521 caggtgtcaacaaattcgttgacaccaaatcctgaccatccatatcatttgatctgaaagctagaaattattcattaaacaaacccatgtgattattgtg 620  Q
    |||||||| || ||||||||||||||||||||| ||| || |||||||||||||| ||||| |||||||||||||||||||  | |||||||||||||||    
T  20213566 caggtgtcgacgaattcgttgacaccaaatcctaaccgtctatatcatttgatctaaaagccagaaattattcattaaacag-ctcatgtgattattgtg 20213468  T
Q  621 tatgttcgcccacgtgatctccttctacatgttgggtttcaatttgtctctctcatcgtaactctgtcactgattttcacccttt 705  Q
    | |||| |||||| |||| || |||| |||||||||||||| |||||||||||||| ||| |||  |||||||||||||||||||    
T  20213467 tctgttagcccacatgatttctttcttcatgttgggtttcagtttgtctctctcattgtagctccatcactgattttcacccttt 20213383  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 521 - 705
Target Start/End: Original strand, 40872164 - 40872347
Alignment:
Q  521 caggtgtcaacaaattcgttgacaccaaatcctgaccatccatatcatttgatctgaaagctagaaattattcattaaacaaacccatgtgattattgtg 620  Q
    ||||||||||| ||||||||||||  ||||||| ||| |  |||||||||||||| ||||| ||||||||||||||||||   | |||||||||||||||    
T  40872164 caggtgtcaacgaattcgttgacataaaatcctaaccgtttatatcatttgatctaaaagccagaaattattcattaaactg-ctcatgtgattattgtg 40872262  T
Q  621 tatgttcgcccacgtgatctccttctacatgttgggtttcaatttgtctctctcatcgtaactctgtcactgattttcacccttt 705  Q
    | |||| |||||| |||| || |||| |||||||||||| | |||||||||||||| ||| ||   |||||||||||||||||||    
T  40872263 tctgttagcccacatgatttctttcttcatgttgggtttgagtttgtctctctcattgtagcttcatcactgattttcacccttt 40872347  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 440 - 515
Target Start/End: Original strand, 22197182 - 22197257
Alignment:
Q  440 actttggtcaatccctccaacataatatatgtcaaactttaatgttatgtggagataatggagatcatcagctttt 515  Q
    |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||    
T  22197182 actttggtcaatacctccaacataatatacgtcaaactttaatcttatgtggagataatgaagatcatcaactttt 22197257  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 440 - 515
Target Start/End: Original strand, 22194434 - 22194509
Alignment:
Q  440 actttggtcaatccctccaacataatatatgtcaaactttaatgttatgtggagataatggagatcatcagctttt 515  Q
    |||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||| |||| |||| |||||    
T  22194434 actttggtcaatacctccaacataatatacgtcaaactttaatcttttgtggagataatgaagattatcaactttt 22194509  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 22196893 - 22196931
Alignment:
Q  240 atgtttgcttattatggaatgaatatattcaaagtccaa 278  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22196893 atgtttgcttattatggaatgaatatattcaaagtccaa 22196931  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 22194145 - 22194183
Alignment:
Q  240 atgtttgcttattatggaatgaatatattcaaagtccaa 278  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  22194145 atgtttgcttattatgcaatgaatatattcaaagtccaa 22194183  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 22197044 - 22197109
Alignment:
Q  318 agaaacaatctggttaagtcaactatacttgcttgaaaatattaa-atattggtaacaactattac 382  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| || || ||||||| ||||||    
T  22197044 agaaacaatctggttaagtcaactatatttgcttacaaatattaacatttttgtaacaattattac 22197109  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 22194295 - 22194339
Alignment:
Q  318 agaaacaatctggttaagtcaactatacttgcttgaaaatattaa 362  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||    
T  22194295 agaaacaatctggttaagtcaactatatttgcttacaaatattaa 22194339  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 551
Target Start/End: Original strand, 13349433 - 13349463
Alignment:
Q  521 caggtgtcaacaaattcgttgacaccaaatc 551  Q
    |||||||||||||||||||||||||||||||    
T  13349433 caggtgtcaacaaattcgttgacaccaaatc 13349463  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 551
Target Start/End: Complemental strand, 23706842 - 23706808
Alignment:
Q  517 gacacaggtgtcaacaaattcgttgacaccaaatc 551  Q
    |||||||||||||||| ||||||||||||||||||    
T  23706842 gacacaggtgtcaacatattcgttgacaccaaatc 23706808  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 551
Target Start/End: Complemental strand, 23725298 - 23725264
Alignment:
Q  517 gacacaggtgtcaacaaattcgttgacaccaaatc 551  Q
    |||||||||||||||| ||||||||||||||||||    
T  23725298 gacacaggtgtcaacatattcgttgacaccaaatc 23725264  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 551
Target Start/End: Complemental strand, 23743754 - 23743720
Alignment:
Q  517 gacacaggtgtcaacaaattcgttgacaccaaatc 551  Q
    |||||||||||||||| ||||||||||||||||||    
T  23743754 gacacaggtgtcaacatattcgttgacaccaaatc 23743720  T

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Target: chr2 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 537 - 705
Target Start/End: Original strand, 20431738 - 20431905
Alignment:
Q  537 cgttgacaccaaatcctgaccatccatatcatttgatctgaaagctagaaattattcattaaacaaacccatgtgattattgtgtatgttcgcccacgtg 636  Q
    ||||||||||||||||| ||| || |||||||||||||| ||||| |||||||||||||||||||  | |||||||||||||||| |||| |||||| ||    
T  20431738 cgttgacaccaaatcctaaccgtctatatcatttgatctaaaagccagaaattattcattaaacag-ctcatgtgattattgtgtctgttagcccacatg 20431836  T
Q  637 atctccttctacatgttgggtttcaatttgtctctctcatcgtaactctgtcactgattttcacccttt 705  Q
    || || |||| |||||||||| | | |||||||||||||| ||| |||  |||||||||||||||||||    
T  20431837 atttctttcttcatgttgggtatgagtttgtctctctcattgtagctccatcactgattttcacccttt 20431905  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 537 - 676
Target Start/End: Original strand, 9749924 - 9750059
Alignment:
Q  537 cgttgacaccaaatcctgaccatccatatcatttgatctgaaagctagaaattattcattaaacaaacccatgtgattattgtgtatgttcgcccacgtg 636  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||| ||||||||  | | ||||||  |||||||| | ||||||||| ||    
T  9749924 cgttgacaccaaatcctgaccgtccatatcatttgatctaaaagccagaatttactcattaaa-gagctcatgtggctattgtgtctattcgcccacatg 9750022  T
Q  637 atctccttctacatgttgggtttcaatttgtctctctcat 676  Q
    ||   |||||||||||||||||||| ||||||||||||||    
T  9750023 at---cttctacatgttgggtttcagtttgtctctctcat 9750059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 606 - 705
Target Start/End: Complemental strand, 45818632 - 45818533
Alignment:
Q  606 catgtgattattgtgtatgttcgcccacgtgatctccttctacatgttgggtttcaatttgtctctctcatcgtaactctgtcactgattttcacccttt 705  Q
    |||||||||||||||| |||| |||||| |||| || |||| |||||||||||| | |||||||||||||| ||| ||   |||||||||||||||||||    
T  45818632 catgtgattattgtgtctgttagcccacatgatttctttcttcatgttgggtttgagtttgtctctctcattgtagcttcatcactgattttcacccttt 45818533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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