View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_high_9 (Length: 662)
Name: NF1576_high_9
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 118 - 456
Target Start/End: Complemental strand, 23325649 - 23325295
Alignment:
| Q |
118 |
catctataaataagagggtatttcttcctaaccaatactttgcatttcaatcaccactctttctctctcaaacagaacaaagtatggaggagctggattc |
217 |
Q |
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| T |
23325649 |
catctataaataagagggtatttcttcctaaccaatactttgcatttcaatcttcactctttctctctcaaacagaacaaagtatggaggagctggattc |
23325550 |
T |
|
| Q |
218 |
agttttcatttaccaagaggtatgtttgttgcatattttattttaacatatagttctcatctttatactctttaaacgaccctttttggttgaatgattt |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23325549 |
agttttcatttaccaagaggtatgtttgtagcatattttattttaacatatggttctcatctttatactctttaaacgaccctttttggttgaatgattt |
23325450 |
T |
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| Q |
318 |
ttccat----------------ttgtcactgtgtttcattattagtattctttatgtgcattatgatgttggattgtttatcactaaatgattcaccann |
401 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23325449 |
ttccatttgtggcttctttcatttgtcactgtgtttcattattagtattctttatgtgcattatgatgttggattgtttatcactaaatgattcaccatt |
23325350 |
T |
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| Q |
402 |
nnnnnnncactattcatttaaaatggattgtggctaaagggatcaaagtattaat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23325349 |
tttttttcactattcatttaaaatggattgtggctaaagggatcaaagtattaat |
23325295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 485 - 646
Target Start/End: Complemental strand, 23325260 - 23325086
Alignment:
| Q |
485 |
atctcagtaaaattgggtggatgttataattttttgtgcatcaacattgattttaaa-------------tatactttgcatcaacattttttattgaga |
571 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
23325260 |
atctcagtaaa-ttgggtggatgttgtaattttttgtgcatcaacattgatttttaacgacaaatactaatatactttgcatcaacattttttattgaga |
23325162 |
T |
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| Q |
572 |
gagttgttcatatttagtatccgacaatgtctcgatcattttgtcaag-aaagaaagacaatgccttgatcatgat |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
23325161 |
gagttgttcatatttagtatccgacaatgtctcgatcattttgtcaagaaaaaaaagacaatgccttgatcatgat |
23325086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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