View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_10 (Length: 564)
Name: NF1576_low_10
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 2018454 - 2017915
Alignment:
| Q |
1 |
ggtacaagcaacaatagtaaaacaatactcaatattttatgatacaatataatattttgcacacattagaatcgtccggatccatccgattagtcttaaa |
100 |
Q |
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| T |
2018454 |
ggtacaagcaacaatagtacaacaatactcaatattttatgatacaatataatattttgcacacattagaatcgtccggatccatccgattagtcttaaa |
2018355 |
T |
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| Q |
101 |
ggtgaaaacaaatatcgagtattattgtgcttgctttaagcaacatgacaagcaaagagaaagaagcgggattagtaatccattcaatttgtcccacttc |
200 |
Q |
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| T |
2018354 |
ggtgaaaacaaatatcgagtattattgtgcttgctttaagcaacatgacaagcaaagagaaagaagcaggactaggaatccattcaatttgtcccacttc |
2018255 |
T |
|
| Q |
201 |
cgcctctttgcttgttcggttgtttaaagtacaatagtacttgtgatacagtataataatttgcaccccacttgattagattagacattaggtttgaaga |
300 |
Q |
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| T |
2018254 |
cgcctctttgcttgttc----------agtacaatagtacttgtgatacagtataatattttgcaccccacttgattagattagacattaggtttgaaga |
2018165 |
T |
|
| Q |
301 |
agagattgaccatggaaacttgtacttatgaaggtgaacataaagaagaaaattatccatgaagtgagccacgatatgggtttagactttgccaacagca |
400 |
Q |
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| T |
2018164 |
agagattgaccatggaaacttgtacttatgaaggtgaacataaagaagaaaattatccatgaagtgagccacgatatgggtttagactttgccaacagca |
2018065 |
T |
|
| Q |
401 |
gaaacctttctatatttttatcatattagtgtcatgatcataagggttaattcatttagaatatactccatgtgcgtgtaacaacaaattcactttcaca |
500 |
Q |
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| T |
2018064 |
gaaacctttctatatttttatcatattagtgccatgatgataaggcttaattcatttagaatatactccatgtgcgtgtaacaacaaattcactttcaca |
2017965 |
T |
|
| Q |
501 |
tttggaatcgtaacaaagtcaagggtttctttttatatagccaacttttt |
550 |
Q |
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| T |
2017964 |
tttggaatcgtaacaaagtcaagggtttctttttatatagccaacttttt |
2017915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11355561 - 11355525
Alignment:
| Q |
25 |
atactcaatattttatgatacaatataatattttgca |
61 |
Q |
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| T |
11355561 |
atactcaatattttatgatacaatataatattttgca |
11355525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 11371833 - 11371869
Alignment:
| Q |
25 |
atactcaatattttatgatacaatataatattttgca |
61 |
Q |
| |
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| T |
11371833 |
atactcaatattttatgatacaatataatattttgca |
11371869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 11355546 - 11355505
Alignment:
| Q |
244 |
tgatacagtataataatttgcaccccacttgattagattaga |
285 |
Q |
| |
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| T |
11355546 |
tgatacaatataatattttgcatcccacttgattagattaga |
11355505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 11371848 - 11371889
Alignment:
| Q |
244 |
tgatacagtataataatttgcaccccacttgattagattaga |
285 |
Q |
| |
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| T |
11371848 |
tgatacaatataatattttgcatcccacttgattagattaga |
11371889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 4083655 - 4083576
Alignment:
| Q |
260 |
tttgcaccccacttgattagattagacattaggtttgaagaagagattgaccatggaaac-ttgtacttatgaaggtgaa |
338 |
Q |
| |
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|||||| ||||||||||||||||||| |||| | ||||||||||| || |||| ||||| ||||||||| ||| ||||| |
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| T |
4083655 |
tttgcatcccacttgattagattagattttagatgtgaagaagagactggccatagaaactttgtacttaagaaagtgaa |
4083576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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