View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_11 (Length: 543)
Name: NF1576_low_11
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 35922045 - 35921711
Alignment:
| Q |
16 |
caacaagataatacgtatggattgaggcaacagttaacattttatgtttttgctactacgcctaaatccttgtagggtatttcaaaaataattttaacag |
115 |
Q |
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| T |
35922045 |
caacaagataatacgtatggattgaggcaacagttaacattttatgtttttgctactacgcctaaatccttgtagggtatttcaaaaataattttaacag |
35921946 |
T |
|
| Q |
116 |
ttaatagtttatttcaaaaagcgcaacttttcatacaatattttatcgtctcaataatttttcaaaatatctaaccattgtagtagggtattaattggtt |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921945 |
ttgatagtttatttcaaaaagcgcaacttttcataca-tattttatcgtctcaataatttttcaaaatatctaaccattgtagtagggtattaattggtt |
35921847 |
T |
|
| Q |
216 |
tgccctgtgggcatcaccaacaattgccagaggttcacttatggttttcctctaggcatgagtaaccccagattgctcttgtgtggtagagaccaacttt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35921846 |
tgccctgtgggcatcaccaacaattgccagaggttcacttatggttttcctctagacatgagtaaccccagattgctcttgtgtggtagaggccaacttt |
35921747 |
T |
|
| Q |
316 |
tcaacccttacaatcacaaatacacatcaatctacc |
351 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35921746 |
tcaacccttacaatcacaaatacacatcaatctacc |
35921711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 434 - 532
Target Start/End: Complemental strand, 35921649 - 35921547
Alignment:
| Q |
434 |
aagaatcagttatgaaggtaaagtttggtgaacacgtcttcaatgacccaaaaaacagacgaagaaaaactatgtccat----gtcaatttcttcatttt |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
35921649 |
aagaatcagttatgaaggtaaagtttggtgaacacgtcttcaatgacccaaaaaacagacgaagaaaaaccatgtccatgtcagtcaatttcttcatttt |
35921550 |
T |
|
| Q |
530 |
cat |
532 |
Q |
| |
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||| |
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| T |
35921549 |
cat |
35921547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 35921692 - 35921662
Alignment:
| Q |
389 |
ccgagtacgtatttatgtacaaaaacactaa |
419 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35921692 |
ccgagtacgtatttatgtacaaaaacactaa |
35921662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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