View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_low_16 (Length: 465)
Name: NF1576_low_16
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1576_low_16 |
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[»] scaffold0027 (1 HSPs) |
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[»] scaffold0536 (1 HSPs) |
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[»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 24887742 - 24888192
Alignment:
Q |
1 |
tttcttatcggaccaaaggctaccaaacatagggtctgtttggcaagtaacatatttaagttcttnnnnnnntaaaaggtaatatatttgagcttatagt |
100 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
T |
24887742 |
tttcttatcggaccaaaggctaccaaacatagggtctgtttggcaagtaacatatttgagttcttaaaaaaataaaaggtaatatatttgagcttatagt |
24887841 |
T |
|
Q |
101 |
ttatagtttatgtcttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgt |
200 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
|
|
T |
24887842 |
ttatagtttatgtcttataagtttatttgattaaaaaggtatgtttgataatcgtcactttttgacgagcttataacctatttttactagtttatcgtgt |
24887941 |
T |
|
Q |
201 |
tttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaagnnnnnnnt |
300 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
24887942 |
tttttaataagcggattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacctttgttgctttaattgaaagaaaaaaaa |
24888041 |
T |
|
Q |
301 |
tcaatatatttgtttacgtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctat |
400 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
T |
24888042 |
tcaatatatttgtttacgtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcacctat |
24888141 |
T |
|
Q |
401 |
caactataacctagtttatcagtcatacgctataagttcatccgctatttg |
451 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24888142 |
caactataacctagtttatcagtcatacgctataagttcatccgctatttg |
24888192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 12473164 - 12473107
Alignment:
Q |
215 |
attcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc |
272 |
Q |
|
|
||||||||||||||||| ||||| ||| || |||||||| | |||| ||||||||||| |
|
|
T |
12473164 |
attcaagtagcttatagcttaaagcttgtagcttatcattttttatctcaattttacc |
12473107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 12473654 - 12473526
Alignment:
Q |
84 |
atatttgagcttatagtttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatt |
182 |
Q |
|
|
||||||||||||||| |||||| ||||| |||||||| | |||||| | ||||||| | ||||| ||| ||| | ||| ||| ||| ||||| | |||| |
|
|
T |
12473654 |
atatttgagcttataacttatagcttatggcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatt |
12473555 |
T |
|
Q |
183 |
tttactagtttatcgtgttttttaataag |
211 |
Q |
|
|
|||||||| || | | ||||||| ||||| |
|
|
T |
12473554 |
tttactagcttgtagcgtttttttataag |
12473526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 38684874 - 38684754
Alignment:
Q |
133 |
aaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagt |
232 |
Q |
|
|
||||||||| ||||| ||| ||||| ||| ||| ||| || ||| |||||||||||| |||| | ||||||| |||||| ||||||||||||||||| |
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|
T |
38684874 |
aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcgttttttgataagctaattcaagtagcttatagc |
38684775 |
T |
|
Q |
233 |
ttaaaacttataacttatcat |
253 |
Q |
|
|
||||| ||||||||||||||| |
|
|
T |
38684774 |
ttaaagcttataacttatcat |
38684754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 1384850 - 1384762
Alignment:
Q |
184 |
ttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc |
272 |
Q |
|
|
|||||||||||| ||||| ||| ||||| ||||||||||||||| | ||||| ||||| | ||||||| | |||||||||||||||| |
|
|
T |
1384850 |
ttactagtttatagtgttgtttgataaggtaattcaagtagcttatggattaaagcttatgatttatcattttttatgtcaattttacc |
1384762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 37083781 - 37083912
Alignment:
Q |
101 |
ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtg |
199 |
Q |
|
|
|||||| |||||||||||||| | ||||||||||||| || ||| | ||| |||| ||| ||||||| ||||| | |||||||||||| |||| | |
|
|
T |
37083781 |
ttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagcttatagca |
37083880 |
T |
|
Q |
200 |
ttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
|||||||||||| ||||||||||||||||| |
|
|
T |
37083881 |
atttttaataagctaattcaagtagcttatag |
37083912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 43822713 - 43822800
Alignment:
Q |
357 |
ttttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcagtcatacgctataagttcatccg |
444 |
Q |
|
|
||||| |||||||| |||| | ||| ||||| ||| ||| |||||| |||||| |||| ||||||||||| ||||||||| ||||||| |
|
|
T |
43822713 |
ttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataagctcatccg |
43822800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 36879202 - 36879046
Alignment:
Q |
87 |
tttgagcttatagtttatagtttatgtcttataagtttatttgattaa-aaagatctgtttgataatcgtcaatttttcacgagtttataacctattttt |
185 |
Q |
|
|
||||| |||||||||||||| | |||||||||||||| |||||| || ||| | | ||||| ||| |||| ||| ||| | | ||||||| ||||||| |
|
|
T |
36879202 |
tttgaacttatagtttatagct-atgtcttataagttcatttgactagtaaaaacccgtttggtaactgtcactttctcatgggattataacttattttt |
36879104 |
T |
|
Q |
186 |
actagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttat |
243 |
Q |
|
|
||||| |||| | |||||| |||||| |||||||||||||| || ||| ||||||| |
|
|
T |
36879103 |
actagcttatagcatttttttataagctaattcaagtagcttagagcttataacttat |
36879046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 9198277 - 9198185
Alignment:
Q |
153 |
cgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataa |
245 |
Q |
|
|
||||| ||| ||||||| ||| | | |||||||||||| |||| | | ||||| |||||| ||||||||||||| ||| ||||||||||||| |
|
|
T |
9198277 |
cgtcactttctcacgagcttaaagcttatttttactagcttatagcggtttttgataagctaattcaagtagcttttagcttaaaacttataa |
9198185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 1163874 - 1163787
Alignment:
Q |
163 |
tcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttat |
250 |
Q |
|
|
||||||||||||||| |||||||| ||||||||||||||| |||||| || ||| ||||||| | ||| || |||||||||||| |
|
|
T |
1163874 |
tcacgagtttataacttatttttaagagtttatcgtgttttcctataagctaatccaaatagcttacaatttgaatcttataacttat |
1163787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 18084908 - 18084842
Alignment:
Q |
356 |
attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag |
422 |
Q |
|
|
|||||| |||||||| |||| | |||||||||| || ||| |||||| |||||| |||||||||||| |
|
|
T |
18084908 |
attttaccaaacactgcaaattcaatcagctaacttatccgctatcatctataagctagtttatcag |
18084842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 7515308 - 7515268
Alignment:
Q |
88 |
ttgagcttatagtttatagtttatgtcttataagtttattt |
128 |
Q |
|
|
|||||||||||||||||| |||||||||||||||| |||| |
|
|
T |
7515308 |
ttgagcttatagtttataacttatgtcttataagttcattt |
7515268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 27679007 - 27679179
Alignment:
Q |
101 |
ttatagtttatgtcttataagtttatttgattaaaaa-gatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtg |
199 |
Q |
|
|
|||||| |||||||||||||| | |||||| ||||| || ||||| |||| |||| || ||||||| ||||| | |||||||||||| |||| | | |
|
|
T |
27679007 |
ttatagcttatgtcttataagctcatttgagcaaaaaagacctgttcaataacggtcacattctcacgagcttatagcttatttttactagcttatagcg |
27679106 |
T |
|
Q |
200 |
ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc |
272 |
Q |
|
|
||||||||||||| ||||||||||||||| | ||||| |||||| |||||||| |||| ||||||||||| |
|
|
T |
27679107 |
ttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcattatttatctcaattttacc |
27679179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 36626049 - 36626010
Alignment:
Q |
98 |
agtttatagtttatgtcttataagtttatttgattaaaaa |
137 |
Q |
|
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
36626049 |
agtttatagtttatgtcttataagtttatttgactaaaaa |
36626010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 3535087 - 3535233
Alignment:
Q |
87 |
tttgagcttatagtttatagtttat--gtcttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttt |
184 |
Q |
|
|
|||||| ||||||||||| |||||| |||||||||||| |||||| | |||||| |||||| ||| |||| ||| | |||||||||| | |||||| |
|
|
T |
3535087 |
tttgaggttatagtttattgtttatatgtcttataagttcatttgactgaaaagacatgtttggtaacagtcactttattgcgagtttatagcttatttt |
3535186 |
T |
|
Q |
185 |
tactagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
||||| |||| | ||||||| |||||| ||||||||||||||||| |
|
|
T |
3535187 |
tactaacttatagcgttttttgataagctaattcaagtagcttatag |
3535233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 21501605 - 21501682
Alignment:
Q |
154 |
gtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
|||| ||| ||||||| ||||| | |||||||||||| ||| ||||||||| |||||| ||||||||||||||||| |
|
|
T |
21501605 |
gtcactttctcacgagcttatagcttatttttactagcatatagtgttttttgataagctaattcaagtagcttatag |
21501682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 39276332 - 39276417
Alignment:
Q |
143 |
gtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagctta |
228 |
Q |
|
|
||||||||| |||| ||| ||||||| ||||||| |||||||||||| |||| ||||||| |||||| |||||||||||||| |
|
|
T |
39276332 |
gtttgataactgtcattttctcacgagcttataacttatttttactagcttataacgttttttgataagctaattcaagtagctta |
39276417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 23686387 - 23686422
Alignment:
Q |
102 |
tatagtttatgtcttataagtttatttgattaaaaa |
137 |
Q |
|
|
|||||||||| ||||||||||||||||||||||||| |
|
|
T |
23686387 |
tatagtttatatcttataagtttatttgattaaaaa |
23686422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 422
Target Start/End: Original strand, 30802465 - 30802531
Alignment:
Q |
356 |
attttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagtttatcag |
422 |
Q |
|
|
|||||| ||||||||||||| | ||| |||||| || ||| |||||| |||||| |||||||||||| |
|
|
T |
30802465 |
attttaccaaacactacaaattcaataagctaacttatccgctatcatctataagctagtttatcag |
30802531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 22347477 - 22347424
Alignment:
Q |
200 |
ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcat |
253 |
Q |
|
|
|||||||||||| || |||||||||| ||| ||||||||||||||||||||| |
|
|
T |
22347477 |
ttttttaataagttaatccaagtagcttgtagcttaaaacttataacttatcat |
22347424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 47987129 - 47987101
Alignment:
Q |
225 |
cttatagtttaaaacttataacttatcat |
253 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
47987129 |
cttatagtttaaaacttataacttatcat |
47987101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 24523956 - 24523833
Alignment:
Q |
114 |
cttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagca |
213 |
Q |
|
|
|||||||||| ||||||||||||||| ||||| ||| ||||| ||| | || || ||||||| |||||||||||| ||| | | ||||| ||| || |
|
|
T |
24523956 |
cttataagttcatttgattaaaaagactagtttgctaaccgtcactttctaacaagcttataacttatttttactagcttagagaggtttttgatatgct |
24523857 |
T |
|
Q |
214 |
gattcaagtagcttatagtttaaa |
237 |
Q |
|
|
|||||||||||||||||| ||||| |
|
|
T |
24523856 |
gattcaagtagcttatagcttaaa |
24523833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 242
Target Start/End: Complemental strand, 32467907 - 32467766
Alignment:
Q |
101 |
ttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtg |
199 |
Q |
|
|
|||||| |||||||||||||| | |||||| | ||||||| ||| ||| ||| ||||| || || ||| ||||| | |||||||||||| |||| || |
|
|
T |
32467907 |
ttatagcttatgtcttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttactagcttatagtc |
32467808 |
T |
|
Q |
200 |
ttttttaataagcagattcaagtagcttatagtttaaaactta |
242 |
Q |
|
|
||||| ||||||| ||||||||||||||||| ||||| |||| |
|
|
T |
32467807 |
gtttttgataagca-attcaagtagcttatagcttaaagctta |
32467766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 41470053 - 41470151
Alignment:
Q |
133 |
aaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
||||||| | ||||| ||| |||| ||| ||||||| ||||||| || ||||||||| | || ||||||||| |||||| | ||||||||||||||| |
|
|
T |
41470053 |
aaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagctcatagtgtttttttataagctaactcaagtagcttatag |
41470151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 5952001 - 5951951
Alignment:
Q |
87 |
tttgagcttatagtttatagtttatgtcttataagtttatttgattaaaaa |
137 |
Q |
|
|
|||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
T |
5952001 |
tttgagcttataatttaaagtttatgttttataagtttatttgattaaaaa |
5951951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 35926746 - 35926678
Alignment:
Q |
163 |
tcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
||||||| ||||| | |||||||||||| || | ||||||||| |||||| |||||||||||||||||| |
|
|
T |
35926746 |
tcacgagcttatagcttatttttactagcttgtagtgttttttgataagctgattcaagtagcttatag |
35926678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 9496747 - 9496814
Alignment:
Q |
110 |
atgtcttataagtttatttgattaaaaagatctgtttgataatcgtcaatttttcacgagtttataac |
177 |
Q |
|
|
||||| |||||| | |||||||||||||||| |||||| |||| |||| ||||||||||| ||||||| |
|
|
T |
9496747 |
atgtcatataagctcatttgattaaaaagatatgtttggtaattgtcattttttcacgagcttataac |
9496814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 15942560 - 15942493
Alignment:
Q |
164 |
cacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
|||||||||||| | || |||||||| |||| ||||||||| |||||| ||||||||||||||||| |
|
|
T |
15942560 |
cacgagtttatagcttaactttactaggttattgtgttttttgataagctaattcaagtagcttatag |
15942493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 426
Target Start/End: Complemental strand, 21516571 - 21516467
Alignment:
Q |
318 |
gtcatttcatacttataagctatttcaaccaccctcttattttaacaaacactacaaagttaatcagctaatttgtcccctatcaactataacctagttt |
417 |
Q |
|
|
||||||||||| ||| ||||||||||||||| || |||||| ||||||| ||||| | ||||||||| || ||| |||||| |||||| |||| || |
|
|
T |
21516571 |
gtcatttcatatttaaaagctatttcaacca----ctaattttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagctt |
21516476 |
T |
|
Q |
418 |
atcagtcat |
426 |
Q |
|
|
|| |||||| |
|
|
T |
21516475 |
ataagtcat |
21516467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 20792028 - 20791959
Alignment:
Q |
179 |
tatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataactt |
248 |
Q |
|
|
|||||||| |||| || ||| ||||| |||||| ||||||||||||||||| ||||| |||||||||| |
|
|
T |
20792028 |
tatttttatgagttcatagtggtttttgataagctaattcaagtagcttatagcttaaatcttataactt |
20791959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 10518264 - 10518316
Alignment:
Q |
200 |
ttttttaataagcagattcaagtagcttatagtttaaaacttataacttatca |
252 |
Q |
|
|
|||||| |||||| ||| ||||||||||||| ||||| |||||||||||||| |
|
|
T |
10518264 |
ttttttgataagctaatttaagtagcttatagcttaaagcttataacttatca |
10518316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 21516763 - 21516659
Alignment:
Q |
133 |
aaaaagatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagt |
232 |
Q |
|
|
||||||| |||||| |||| |||| ||||||||||| ||||||| || ||| | || |||| | |||||||| |||||| | ||||||| ||||||| |
|
|
T |
21516763 |
aaaaagacatgtttggtaattgtcattttttcacgagcttataacttaatttgatgagcttatagcgttttttattaagcaaaatcaagtatcttatagc |
21516664 |
T |
|
Q |
233 |
ttaaa |
237 |
Q |
|
|
||||| |
|
|
T |
21516663 |
ttaaa |
21516659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 42747633 - 42747713
Alignment:
Q |
192 |
ttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc |
272 |
Q |
|
|
|||| ||||||||| |||||| ||||||||| |||||| ||||| |||||| ||||||| | |||| ||||||||||| |
|
|
T |
42747633 |
ttatagtgtttttttataagctaattcaagtaacttataacttaaagcttatagcttatcactttttatctcaattttacc |
42747713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 6462458 - 6462365
Alignment:
Q |
179 |
tatttttactagtttatcgtgttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcatctattatgtcaattttacc |
272 |
Q |
|
|
|||||||||||| |||| ||| ||||| |||||| |||||||||||||||| ||||| |||||| |||||||| |||| ||||||||||| |
|
|
T |
6462458 |
tatttttactagcttatagtggtttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcattatttatctcaattttacc |
6462365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 13838899 - 13838861
Alignment:
Q |
215 |
attcaagtagcttatagtttaaaacttataacttatcat |
253 |
Q |
|
|
||||||||||||||||| |||||||||||| |||||||| |
|
|
T |
13838899 |
attcaagtagcttatagcttaaaacttatagcttatcat |
13838861 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 16870009 - 16869957
Alignment:
Q |
179 |
tatttttactagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
|||||||||||| |||| | ||||||| |||||| ||||||||||||||||| |
|
|
T |
16870009 |
tatttttactagcttatagcgttttttgataagctaattcaagtagcttatag |
16869957 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 7952 - 8006
Alignment:
Q |
199 |
gttttttaataagcagattcaagtagcttatagtttaaaacttataacttatcat |
253 |
Q |
|
|
||||||| |||||| |||||||||||| ||| ||||||| ||||||||||||||| |
|
|
T |
7952 |
gtttttttataagctgattcaagtagcatattgtttaaatcttataacttatcat |
8006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 4325 - 4420
Alignment:
Q |
103 |
atagtttatgtcttataagtttatttgattaaaaa---gatctgtttgataatcgtcaatttttcacgagtttataacctatttttactagtttat |
195 |
Q |
|
|
||||||||| || |||||| | |||||| |||||| ||| | |||||||| |||| ||| ||| ||||||||||| ||||||||||||||||| |
|
|
T |
4325 |
atagtttatatcatataagctcatttgactaaaaaacagatttatttgataaatgtcactttatcatgagtttataacttatttttactagtttat |
4420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 50056 - 49911
Alignment:
Q |
87 |
tttgagcttatagtttatagtttatgtcttataagtttatttga-ttaaaaagatctgtttgataatcgtcaatttttcacgagtttataacctattttt |
185 |
Q |
|
|
|||||||||||||||| ||| ||||||||||| | | |||||| | ||||||| | ||||| ||| |||| ||| ||||||| ||||| | ||||||| |
|
|
T |
50056 |
tttgagcttatagtttgtagcttatgtcttattaactcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagcttattttt |
49957 |
T |
|
Q |
186 |
actagtttatcgtgttttttaataagcagattcaagtagcttatag |
231 |
Q |
|
|
| || |||| | | ||| | |||||| ||||||||||||||||| |
|
|
T |
49956 |
aagagcttatagcggtttgtgataagctaattcaagtagcttatag |
49911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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