View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_low_17 (Length: 452)
Name: NF1576_low_17
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1576_low_17 |
| |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 9 - 436
Target Start/End: Complemental strand, 41085917 - 41085490
Alignment:
Q |
9 |
tccaagaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
108 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
41085917 |
tccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
41085818 |
T |
|
Q |
109 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
208 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
41085817 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
41085718 |
T |
|
Q |
209 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
308 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
41085717 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
41085618 |
T |
|
Q |
309 |
gaactggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
408 |
Q |
|
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
41085617 |
gaattggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
41085518 |
T |
|
Q |
409 |
ggaattcttgggattcttttgatctttc |
436 |
Q |
|
|
|||||||||||||||||||||||||||| |
|
|
T |
41085517 |
ggaattcttgggattcttttgatctttc |
41085490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 19400 times since January 2019
Visitors: 3809