View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_low_19 (Length: 434)
Name: NF1576_low_19
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 418
Target Start/End: Original strand, 4655960 - 4656386
Alignment:
| Q |
14 |
gcataggaaaccaaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4655960 |
gcataggaaaccaaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcct |
4656059 |
T |
|
| Q |
114 |
ttttctcgttgcattcaagttttcaaattgacctcatacataatcttttgaccattttcaataacattcttttattct--tatttttacatttcagctaa |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| | |
|
|
| T |
4656060 |
ttttctcattgcattcaagttttcaaattgacctcatacataatattttgaccattttcaataacattcttttattcttgtattcttacatttcagctca |
4656159 |
T |
|
| Q |
212 |
taattgtaccgatacctccgattgctcaagtaatgattgttcctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaa-- |
309 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4656160 |
taattgtaccgatatatccgattgctcaagtaatcattgttcctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaagt |
4656259 |
T |
|
| Q |
310 |
--gaa----------------aagcttacaattttacttatatgtcaaagtgaatgttgttactcttatggtttctctcacactttgagttatacttttg |
391 |
Q |
| |
|
||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4656260 |
tggaaactaactgtattacttaagtttacaattttacttatatgtcacggtgaatgttgttactcttatggtttctctcacactttgagttatgcttttg |
4656359 |
T |
|
| Q |
392 |
acctttcaaattcttttacagaataag |
418 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4656360 |
acctttcaaattcttttacagaataag |
4656386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 4647515 - 4647812
Alignment:
| Q |
14 |
gcataggaaaccaaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagcct |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4647515 |
gcataggaaaccaaatatgaccaagttttttaagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatgccaatggtaagact |
4647614 |
T |
|
| Q |
114 |
tttt-ctcgttgcattcaagttttcaaattgacctcatacataatcttttgaccattttcaataacattcttttattcttatttttacatttcagctaat |
212 |
Q |
| |
|
|||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4647615 |
tttttctcaccgtattcaagttttcaaattgacctcatacataatcttctgaccattttcaataacattcttttattcttatttttacatttcagctaat |
4647714 |
T |
|
| Q |
213 |
aattgtaccgatacctccgattgctcaagtaatgattgttcctacgagggggtgtcattatgcatgaatggtcaatgcatatgcatttacgagtaaag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4647715 |
aattgtaccgatacctccgattgctcaagtaatcattgttcctatgagggggtgtcattatgcatgaatggtcaatgtatatgcatttacgagtaaag |
4647812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 313 - 414
Target Start/End: Original strand, 4647837 - 4647938
Alignment:
| Q |
313 |
aagcttacaattttacttatatgtcaaagtgaatgttgttactcttatggtttctctcacactttgagttatacttttgacctttcaaattcttttacag |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
4647837 |
aagcttacaattttacttatatgtcaaagtgaatgttgttactcttatggtttctctcacactttgagttatatttttgacctttcaatttcttttccag |
4647936 |
T |
|
| Q |
413 |
aa |
414 |
Q |
| |
|
|| |
|
|
| T |
4647937 |
aa |
4647938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 31038188 - 31038244
Alignment:
| Q |
27 |
aatatgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
83 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
31038188 |
aatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
31038244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 23233451 - 23233497
Alignment:
| Q |
45 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgt |
91 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
23233451 |
aagtttttttatactatgatcattttagtttccctatttcttgttgt |
23233497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 22815825 - 22815879
Alignment:
| Q |
45 |
aagtttgtttatactatgttcattttaatttctctatttcttgttgttaccaatg |
99 |
Q |
| |
|
||||||||||||| ||| || |||| |||||||||||||||||||||| ||||| |
|
|
| T |
22815825 |
aagtttgtttatattatactcctttttatttctctatttcttgttgttatcaatg |
22815879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 259 times since January 2019
Visitors: 3986