View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_low_2 (Length: 869)
Name: NF1576_low_2
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1576_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 786; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 786; E-Value: 0
Query Start/End: Original strand, 19 - 854
Target Start/End: Original strand, 39456638 - 39457470
Alignment:
Q |
19 |
agcttgtgcacactcaacttattttgatttttgtatgtaaactcaatttggttaagaataaaattgtaacagtagcatagaagaagagtcaattttatca |
118 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
T |
39456638 |
agcttgtgcacactcaacttattttgatttttgtatgtaaactcaatttggttaagaataaaattgtaacagtagcatagaa---gagtcaattttatca |
39456734 |
T |
|
Q |
119 |
acactgtttttcttaatgatccaaaaagatgtagtacacaataaaaccaatgtaatacgaaatggtaaaattcccaaaccagaaaccaaagagcaatctt |
218 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
T |
39456735 |
acactgtttttcttaatgatccaaaaagatgtagtacacaataaaaccaatgtaatacgaaatggaaaaattcccaaaccagaaaccaaagagcaatctt |
39456834 |
T |
|
Q |
219 |
aaacagaactacctgcatatacaaaatagaacgatttctaagtttgaattttgattgtcaaaaacaaatttgatcatcatcacttacgcattgcaattga |
318 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
39456835 |
aaacagaactacctgcatatacaaaacagaacgatttctaagtttgaattttgattgtcaaaaacaaatttgatcatcatcacttacgcattgcaattga |
39456934 |
T |
|
Q |
319 |
ttagtcattggttgaaagcgttgaaatatactaaaatctttaatcaaagaaaagaaagaacaacaacttgttagattgacctatgttgataataaaacca |
418 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
39456935 |
ttagtcattggttgaaagcgttgaaatatactaaaatctttaatcaaagaaaagaaagaacaacaacttgttagattgacctatgttgataataaaacca |
39457034 |
T |
|
Q |
419 |
cagcctctaacctttttgaaagtgggtactagcataatttattttgatacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatc |
518 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
39457035 |
cagcctctaacctttttgaaagtgggtactaccataatttattttgatacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatc |
39457134 |
T |
|
Q |
519 |
ctccatctaacagagtcttcttacttgcttcactcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaat |
618 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
T |
39457135 |
ctccatctaacagagtcttcttacttgctgcactcatctctttcactttcttccttacctctccatccttatccaacacactctttattcctctctcaat |
39457234 |
T |
|
Q |
619 |
cttgtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaat |
718 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
T |
39457235 |
cttgtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatgcaatctccacagccatcttcagctcacataccaattgaaat |
39457334 |
T |
|
Q |
719 |
gcatttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatc |
818 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
T |
39457335 |
gcatttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatatgttctcgagtgtggaattccagccacaatgagaaacaaatc |
39457434 |
T |
|
Q |
819 |
ctcccgtggctgggtgagctagtatgtgcgtctgtg |
854 |
Q |
|
|
|||||||||||||||| ||||||||||||||||||| |
|
|
T |
39457435 |
ctcccgtggctgggtgggctagtatgtgcgtctgtg |
39457470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 476 - 843
Target Start/End: Original strand, 39463354 - 39463721
Alignment:
Q |
476 |
ataatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgcttcactcatctctttcactttcttcctta |
575 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
39463354 |
ataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttcactttcttcctta |
39463453 |
T |
|
Q |
576 |
cctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaa |
675 |
Q |
|
|
| |||||||||||||| ||||| ||| ||||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| | || ||||| || |
|
|
T |
39463454 |
cttctccatccttatctaacacactccttattcctctctcaatcttatcagcagttacaagatagttaggctcgccaagaaactccactctgtaatccaa |
39463553 |
T |
|
Q |
676 |
tgcgatctccacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatat |
775 |
Q |
|
|
|| |||||||| |||||||| | |||||| |||| || ||| ||||||||||| || |||||||||| |||||| ||||||| || |||||||||||| |
|
|
T |
39463554 |
tgaaatctccaccgccatctttaactcacacaccagttcaaaagcatttgtctgttgttcagcaaagatcggccaagtggcaagtggaacaccaaaatat |
39463653 |
T |
|
Q |
776 |
atgctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtgagctagtat |
843 |
Q |
|
|
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |
|
|
T |
39463654 |
atgctctccagtgtcgaattccagccacaatgtgagacaaatcctcccgtggccgggtgggctagtat |
39463721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 445 - 843
Target Start/End: Complemental strand, 39476919 - 39476521
Alignment:
Q |
445 |
tactagcataatttattttgatacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttactt |
544 |
Q |
|
|
|||||| |||||||| ||| |||||| ||||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||| |||||||||||| |
|
|
T |
39476919 |
tactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactc |
39476820 |
T |
|
Q |
545 |
gcttcactcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttag |
644 |
Q |
|
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||| |||||| || |||||||||| ||||||||||| |
|
|
T |
39476819 |
ttttcactcatctctttcactttcttccttacatctgcatccttatccaacacactccttattcctcgctcaattttatcggcagttacaagatagttag |
39476720 |
T |
|
Q |
645 |
actcgccattaaactctaacctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagag |
744 |
Q |
|
|
| ||| | ||||| | ||||||||| |||||||| |||||| | |||||||||||||| ||||||| ||| ||||| | ||| || ||||||||||| |
|
|
T |
39476719 |
gcctaccacttaactccaccctataatccaatgcgatatccacacctatcttcagctcacacaccaattcaaaagcattagcctgttgttcagcaaagag |
39476620 |
T |
|
Q |
745 |
cggccacgtggcaacaggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtgagctagtat |
843 |
Q |
|
|
||||| | ||||| || |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||| |||||||| |
|
|
T |
39476619 |
tggccatgcggcaattggtacaccaaaatatatgctctcgagtgttgaattccaaccacaatgtgaaacaaatcctcctatggctgggtgggctagtat |
39476521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 422 - 843
Target Start/End: Complemental strand, 39452430 - 39452009
Alignment:
Q |
422 |
cctctaacctttttgaaagtgggtactagcataatttattttgatacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctc |
521 |
Q |
|
|
||||| || |||||| |||| |||||||| ||| |||| ||| ||||||| | |||||||||||| || ||||||| ||||||| || |||||||||||| |
|
|
T |
39452430 |
cctcttacatttttgtaagtaggtactaggatagtttaatttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagatcctc |
39452331 |
T |
|
Q |
522 |
catctaacagagtcttcttacttgcttcactcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaatctt |
621 |
Q |
|
|
| |||||||||||||||||||| ||||||||||||||||| ||| ||||| | ||||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
T |
39452330 |
cttctaacagagtcttcttactcttttcactcatctctttcatttttttcctgaactctccatccttatccaacacactccttattcctttctcaatctt |
39452231 |
T |
|
Q |
622 |
gtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaatgca |
721 |
Q |
|
|
||| ||||| ||||||||||||| | | |||||||| | |||||||||||| || |||||||| | ||||||| |||||| ||||||| ||| ||| |
|
|
T |
39452230 |
gtcagcagtcaaaagatagttaggaccactgttaaactccaccctataatctaacgcaatctccacggaaatcttcaactcacacaccaattcaaaagca |
39452131 |
T |
|
Q |
722 |
tttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctc |
821 |
Q |
|
|
|| ||| || ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
39452130 |
ttaacctgttgctcagcaaagagcggccatgttgcaatgggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgtgaaacaaatcctc |
39452031 |
T |
|
Q |
822 |
ccgtggctgggtgagctagtat |
843 |
Q |
|
|
| ||||||| || |||||||| |
|
|
T |
39452030 |
ctatggctggatgtgctagtat |
39452009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 452 - 843
Target Start/End: Complemental strand, 39484665 - 39484272
Alignment:
Q |
452 |
ataatttattttgatacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgcttcac |
551 |
Q |
|
|
|||||||| ||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||| || ||||||| ||||||| |||| |||| |
|
|
T |
39484665 |
ataatttaatttgatacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcac |
39484566 |
T |
|
Q |
552 |
tcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgcc |
651 |
Q |
|
|
|||| | ||||||||||||| | |||||||||||||||| |||||| ||| ||||| |||||||||||||||||||| ||| ||||||||||||||| || |
|
|
T |
39484565 |
tcatttttttcactttcttcttaacctctccatccttatacaacacactccttattactctctcaatcttgtcggcacttacaagatagttagactcacc |
39484466 |
T |
|
Q |
652 |
attaaactctaacctataatctaatgcgatctc--cacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagagcggcc |
749 |
Q |
|
|
| ||||||| | ||||||||| ||||| ||||| |||| | |||| ||||||||| ||||||| ||| ||||| | ||| || ||| ||||||| |||| |
|
|
T |
39484465 |
actaaactccatcctataatccaatgcaatctccacacacctatctgcagctcacacaccaattcaaaagcattagcctgttgttcaacaaagagtggcc |
39484366 |
T |
|
Q |
750 |
acgtggcaacaggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtgagctagtat |
843 |
Q |
|
|
| | ||||| |||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||||||||| |||||||||| |||||||| |
|
|
T |
39484365 |
atgcggcaataggcacaccaaaatatatgctctcgagtgttgaattccaaccataatgtgaaacaaatcctcctatggctgggtgggctagtat |
39484272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 422 - 843
Target Start/End: Complemental strand, 39456058 - 39455637
Alignment:
Q |
422 |
cctctaacctttttgaaagtgggtactagcataatttattttgatacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctc |
521 |
Q |
|
|
||||| ||||||||| | |||| |||| | | |||||| ||||||||||| | |||||||||||| || |||||||||||||||||| | |||||||||| |
|
|
T |
39456058 |
cctctgacctttttgtatgtggatacttggacaatttaatttgatacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctc |
39455959 |
T |
|
Q |
522 |
catctaacagagtcttcttacttgcttcactcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaatctt |
621 |
Q |
|
|
| ||||||| ||||||||| || ||||||||||||||||||| | ||||| | |||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
T |
39455958 |
cctctaacaaagtcttcttgctcttttcactcatctctttcactgttttcctaaactctccatccttatccaatacactccttattcctctctcaatctt |
39455859 |
T |
|
Q |
622 |
gtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaatgca |
721 |
Q |
|
|
||| | ||||||||||||||||| | | | | || |||| | ||||||||||| || ||||||||||| |||||||||||||| ||||||| ||| ||| |
|
|
T |
39455858 |
gtccgaagttaaaagatagttaggcccactactatactccaccctataatctagcgcaatctccacagcaatcttcagctcacacaccaattcaaaagca |
39455759 |
T |
|
Q |
722 |
tttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctc |
821 |
Q |
|
|
| ||| || ||||||||||||||||| || |||| ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
T |
39455758 |
gtaacctgttgttcagcaaagagcggccatgttgcaatgggcacaccaaagtatatgccctcgagtgtggaattccaaccacaatgtgaaacaaatcctc |
39455659 |
T |
|
Q |
822 |
ccgtggctgggtgagctagtat |
843 |
Q |
|
|
| |||||||| || |||||||| |
|
|
T |
39455658 |
ctgtggctggatgggctagtat |
39455637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 452 - 843
Target Start/End: Complemental strand, 39487865 - 39487474
Alignment:
Q |
452 |
ataatttattttgatacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgcttcac |
551 |
Q |
|
|
|||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
|
|
T |
39487865 |
ataatttaatttgatacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcac |
39487766 |
T |
|
Q |
552 |
tcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgcc |
651 |
Q |
|
|
|||||||| ||||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||| || ||||||| ||||||||||| | | | |
|
|
T |
39487765 |
tcatctctatcacttttttcctgaattctccatccttatccaacaaattccttattcctctctcaatcttatccgcagttacaagatagttaggcccttc |
39487666 |
T |
|
Q |
652 |
attaaactctaacctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagagcggccac |
751 |
Q |
|
|
||||||| | | | ||||||| || || || |||||| | || ||||| ||||| ||||||| ||| ||||| | ||| || |||||| |||| |||||| |
|
|
T |
39487665 |
attaaaccccaccttataatccaaagcaatttccacacctattttcagttcacacaccaattcaaaagcattagcctgttgctcagcatagagtggccac |
39487566 |
T |
|
Q |
752 |
gtggcaacaggcacaccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtgagctagtat |
843 |
Q |
|
|
| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
T |
39487565 |
gcggcaataggcacaccaaaatatatgctctcgagtgttgaattccaaccacaatgcgaaacaaatcctccagtggctggatgagctagtat |
39487474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 478 - 834
Target Start/End: Complemental strand, 39461627 - 39461271
Alignment:
Q |
478 |
aatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgcttcactcatctctttcactttcttccttacc |
577 |
Q |
|
|
|||| |||| || ||||||||||||| | |||| |||||||| || ||||||| ||| ||| |||| |||||||||||||||||||||||| || ||| |
|
|
T |
39461627 |
aataaaatctattaaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatctctttcactttctttctgacc |
39461528 |
T |
|
Q |
578 |
tctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatg |
677 |
Q |
|
|
||||||||||| |||||||| || |||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| ||||| | ||||||||||| |
|
|
T |
39461527 |
tctccatccttttccaacacattccttattcctctctcaatcttgtcagcagttacaagatagttaggctcaccattgaactccactctataatctaaca |
39461428 |
T |
|
Q |
678 |
cgatctccacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatat |
777 |
Q |
|
|
| |||||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||||||||| || |
|
|
T |
39461427 |
caatctccacagccatcttcagctcatgcaccaactgaaaagcattagtctgttgttcagcaaagagcggccacgtggcaatgggcacaccaaaatacat |
39461328 |
T |
|
Q |
778 |
gctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtg |
834 |
Q |
|
|
|||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
T |
39461327 |
gctctcgagtattgaattccagccacaatgggaaacgaatcctcccgtggctgggtg |
39461271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 465 - 843
Target Start/End: Complemental strand, 39473417 - 39473039
Alignment:
Q |
465 |
atacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgcttcactcatctctttcac |
564 |
Q |
|
|
||||||||| |||||||||||| | ||| ||||||||||| | ||| |||||||| || ||||||| ||||||||||||| |||||||||||||||||| |
|
|
T |
39473417 |
atacctgattcataatataatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcac |
39473318 |
T |
|
Q |
565 |
tttcttccttacctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccattaaactctaac |
664 |
Q |
|
|
|||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||| | | ||||||||||| | |
|
|
T |
39473317 |
tttcttccttacatctccatccttatccaacacactccttattcctctctcaatcttatcggcagttacaagatagttaggcgcaccattaaactccgcc |
39473218 |
T |
|
Q |
665 |
ctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagagcggccacgtggcaacaggca |
764 |
Q |
|
|
|||||||| || | || || || | || |||| |||||| ||||||| ||| ||||| ||||| || || ||| | || ||||| | ||| | ||||| |
|
|
T |
39473217 |
ctataatccaacgaaatttcaactcctattttcaactcacacaccaattcaaaagcattagtctgttgttctgcataaagtggccatgcggctataggca |
39473118 |
T |
|
Q |
765 |
caccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtgagctagtat |
843 |
Q |
|
|
|||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||| |||||||||| |||||||| |
|
|
T |
39473117 |
caccaaaataaatgctctcgagtactgaattccaaccacaatgcgaagcaaatcctccaatggctgggtgggctagtat |
39473039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 465 - 842
Target Start/End: Original strand, 43311316 - 43311693
Alignment:
Q |
465 |
atacctgatacataatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgcttcactcatctctttcac |
564 |
Q |
|
|
|||| |||| |||||||||||| ||||||| |||||| |||||||||||||||| || ||||||| |||||| ||| |||||||||||||||||| |
|
|
T |
43311316 |
atacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctctttcac |
43311415 |
T |
|
Q |
565 |
tttcttccttacctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccattaaactctaac |
664 |
Q |
|
|
||||||||||||||||||||| | |||||||| ||| |||||||| |||| |||||||| | || ||||||||| | | | | ||| |||| | | |
|
|
T |
43311416 |
tttcttccttacctctccatctgtttccaacacactccttattcctttctcgatcttgtctgaagctaaaagataatcacgcccaacatcgtactccatc |
43311515 |
T |
|
Q |
665 |
ctataatctaatgcgatctccacagccatcttcagctcacataccaattgaaatgcatttgtctgctgatcagcaaagagcggccacgtggcaacaggca |
764 |
Q |
|
|
|||||||| | ||| ||||||||| |||||||||||||| | || | |||||| ||||| || || |||||||||||||| ||||| ||||||| ||||| |
|
|
T |
43311516 |
ctataatccactgcaatctccacacccatcttcagctcagacacaagttgaaaagcattggtttgttgatcagcaaagagtggccatgtggcaataggca |
43311615 |
T |
|
Q |
765 |
caccaaaatatatgctctcgagtgtggaattccagccacaatgagaaacaaatcctcccgtggctgggtgagctagta |
842 |
Q |
|
|
||||| |||||||||||||||| || |||||||| |||||||| |||||||| ||||| || ||||| ||||| |||| |
|
|
T |
43311616 |
caccataatatatgctctcgagagtcgaattccaaccacaatgtgaaacaaagcctcctgttgctggatgagcgagta |
43311693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 532 - 705
Target Start/End: Original strand, 39452831 - 39453004
Alignment:
Q |
532 |
agtcttcttacttgcttcactcatctctttcactttcttccttacctctccatccttatccaacacgctctttattcctctctcaatcttgtcggcagtt |
631 |
Q |
|
|
||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||| |
|
|
T |
39452831 |
agtcttcttacatgtttcacttatctcttgcactttctttcttacctctccatccttatacaacacactctttattcctctctcaattttgtccgcagtt |
39452930 |
T |
|
Q |
632 |
aaaagatagttagactcgccattaaactctaacctataatctaatgcgatctccacagccatcttcagctcaca |
705 |
Q |
|
|
|||||| |||||||||| ||| ||||||| ||||| |||||||| | |||||||| ||||||||| |||||| |
|
|
T |
39452931 |
aaaagagagttagactcaccaataaactccaacctctaatctaacgtaatctccacgaccatcttcaactcaca |
39453004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 39452592 - 39452692
Alignment:
Q |
45 |
atttttgtatgtaaactcaatttggttaagaataaaattgtaacagtagcatagaagaagagtcaattttatcaacactgtttttcttaatgatccaaaa |
144 |
Q |
|
|
|||||| ||||||||| |||||||||||||||||||| |||| ||||| |||| | ||||| |||||| ||||||| ||| |||| |||||||||||||| |
|
|
T |
39452592 |
atttttttatgtaaacacaatttggttaagaataaaaatgtatcagtaacatacaggaagaatcaattctatcaaccctgctttttttaatgatccaaaa |
39452691 |
T |
|
Q |
145 |
a |
145 |
Q |
|
|
| |
|
|
T |
39452692 |
a |
39452692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 39485205 - 39485097
Alignment:
Q |
40 |
ttttgatttttgtatgtaaactcaatttggttaagaataaaattgtaacagtagc---atagaagaagagtcaattttatcaacactgtttttcttaatg |
136 |
Q |
|
|
|||| |||||||| |||| ||||||||||||||||||| ||| |||||||| | | | ||||| ||| |||||||| ||| |||| ||||||||||| |
|
|
T |
39485205 |
ttttaatttttgtgtgtatactcaatttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtactgcttttcttaatg |
39485106 |
T |
|
Q |
137 |
atccaaaaa |
145 |
Q |
|
|
||||||||| |
|
|
T |
39485105 |
atccaaaaa |
39485097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 39477563 - 39477455
Alignment:
Q |
40 |
ttttgatttttgtatgtaaactcaatttggttaagaataaaattgtaacagtagcata---gaagaagagtcaattttatcaacactgtttttcttaatg |
136 |
Q |
|
|
|||| ||||||||||||| | ||||||||||||||||| ||| |||||||| | || | |||| ||| |||||||| ||| |||| ||||||||||| |
|
|
T |
39477563 |
ttttaatttttgtatgtataatcaatttggttaagaatgaaaatgtaacagcaacaaaaatgaagcagaatcaattttgtcagtactgcttttcttaatg |
39477464 |
T |
|
Q |
137 |
atccaaaaa |
145 |
Q |
|
|
|| |||||| |
|
|
T |
39477463 |
attcaaaaa |
39477455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 39488559 - 39488467
Alignment:
Q |
47 |
ttttgtatgtaaactcaatttggttaagaataaaattgtaacagtagcatagaagaagagtcaattttatcaacactgtttttcttaatgatcca |
141 |
Q |
|
|
||||||||| |||||||||||||||| ||||| || |||| || || | | ||| ||| ||||||||||||| | || |||||||||||||||| |
|
|
T |
39488559 |
ttttgtatgcaaactcaatttggttaggaatagaaatgtagcacta--acaaaagcagattcaattttatcaatattgcttttcttaatgatcca |
39488467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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