View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_20 (Length: 432)
Name: NF1576_low_20
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 3 - 415
Target Start/End: Original strand, 2323216 - 2323635
Alignment:
| Q |
3 |
agtttgtgtttattctttcaacttccattcatttaactagtgttccaacatctagcaatggtgttcatggaagtaagggaacatgcactgaaggtgctgc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
2323216 |
agtttgtgtttattctttcaacttccattcatttaactagtgttccaacatctagcaatggtgttaatggaagtaagggaacgtgcactgaaggtgctgc |
2323315 |
T |
|
| Q |
103 |
tgctacttgcacttctaca---ggaatacagtaagatat----aatgcaattaacaccttcctttttcagaaaaagaaatcaagaactcatggtttagaa |
195 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
2323316 |
tgctacttgcacttctactacgggaatacagtaagatatatataatgcaattaacaccttcctttttcagaacaagaagtcaagaactcatggtttagaa |
2323415 |
T |
|
| Q |
196 |
aaagggttttacctttaaaaatcaatgccaaatgaaaaagcactcgtgcaagatatgctaaaattattgcaacaagggaataaacaacatggggatcatc |
295 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323416 |
aaaaggttttacctttaaaaatcaatgccaaatgaaaaagcactcgtgcaagatatcctaaaattattgcaacaagggaataaacaacatggggatcatc |
2323515 |
T |
|
| Q |
296 |
ctcggttacaacctagttttcgtccaggcttggctcaagtggtccacacttgggaatatttgagttcaaatcttggctgaagcaatccttggtgttgtgt |
395 |
Q |
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|| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323516 |
cttggttacaacctagttttcgtccaggctttgctcatgtggtccacacttgggaatatttgagttcaaatcttggctgaagcaatccttggtgttgtgt |
2323615 |
T |
|
| Q |
396 |
agaaggtgtgaattagaagt |
415 |
Q |
| |
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| T |
2323616 |
agaaggtgtgaattagaagt |
2323635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 76 - 391
Target Start/End: Original strand, 2313550 - 2313867
Alignment:
| Q |
76 |
taagggaacatgcactgaaggtgctgctgctacttgcacttctac---aggaatacagtaagatataatgcaattaacaccttcctttttcagaaaaaga |
172 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2313550 |
taagggaacatgcactgaatatgctgctgctacttggacttctactacaggaatacagtaagatataatgcaattaacaccttcctttttcagaacaaga |
2313649 |
T |
|
| Q |
173 |
aatcaagaactcatggtttagaaaaagggttttacctttaaaaatcaatgccaaatgaaaaagcactcgtgcaagatatgctaaaattattgcaacaagg |
272 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2313650 |
aatcaagaactcatggtttagaaaaaaggttttacctttaaaattcaatgccaaatgaaaaagcactcgtgcaagatatcctaaaattattgcaacaagg |
2313749 |
T |
|
| Q |
273 |
gaataaacaacatggggatcatcctcggttacaacctagttttcgtccaggcttggctcaagtggtccacacttgggaatatttgagttcaaatcttggc |
372 |
Q |
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|||||| ||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||| |||| |
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| T |
2313750 |
gaataagcaaaatggggatcatccttggttacaaccaagttttcgtccaggctaggctcaagtaat-cacatttgggaatatttgagttcaaatcgtggc |
2313848 |
T |
|
| Q |
373 |
tgaagcaatccttggtgtt |
391 |
Q |
| |
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||||||||||||||||||| |
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| T |
2313849 |
tgaagcaatccttggtgtt |
2313867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 2336327 - 2336644
Alignment:
| Q |
118 |
tacaggaatacagtaagatataatgcaattaacaccttcctttttcagaaaaagaaatcaagaac-----------tcatggtttagaaaaagggtttta |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||| ||| || |||||||||||||| ||||||||||| |||| || |||| |
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| T |
2336327 |
tacaggaatacagtaagatataatgcaattaacgccttcttttctca-aacaagaaatcaagaacatagggtgttgtcatggtttagtaaaaaggcttta |
2336425 |
T |
|
| Q |
207 |
cctttaaaaatcaatgccaaatgaaaaagcactcgtgcaagatatgctaaaattattgcaacaagggaataaacaacatggggatcatcctcggttaca- |
305 |
Q |
| |
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||||||||| | | || |||||||||||||||| |||||||||| || |||||||||||| ||||| ||||||||| ||||| |||| | ||||||| |
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| T |
2336426 |
cctttaaaattga-tgagaaatgaaaaagcactcatgcaagatatccttaaattattgcaataaggg-ataaacaacctggggttcatatttggttacag |
2336523 |
T |
|
| Q |
306 |
acctagttttcgtcca-------ggcttggctcaagtggtccacacttgggaatatttgagttcaaatcttggctgaagcaatcct---tggtgttgtgt |
395 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||| |||| | ||||| ||||||||||||||| ||| || ||||||||| ||||||||||| |
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| T |
2336524 |
acctatttttcgtccaactaaatggctcggctcaagtggttcacattcgggaacatttgagttcaaatcctgggtggagcaatccttggtggtgttgtgt |
2336623 |
T |
|
| Q |
396 |
agaaggtgtgaattagaagtt |
416 |
Q |
| |
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|| | |||||| ||||||||| |
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| T |
2336624 |
agcatgtgtgagttagaagtt |
2336644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 2343716 - 2343803
Alignment:
| Q |
54 |
ctagcaatggtgttcatggaagtaagggaacatgcactgaaggtgctgctgctacttgcactt---ctacaggaatacagtaagatat |
138 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2343716 |
ctagcaatggtgttaatggaagtaatggaacatgcactgaaggtgctgctgctacttgcacttctgctacaggaatacagtaagatat |
2343803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 9996123 - 9996075
Alignment:
| Q |
5 |
tttgtgtttattctttcaacttccattcatttaactagtgttccaacat |
53 |
Q |
| |
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||||||||||||||| |||||| || ||||||||| |||||||||||| |
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| T |
9996123 |
tttgtgtttattcttccaactttcactcatttaaccggtgttccaacat |
9996075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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