View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_26 (Length: 366)
Name: NF1576_low_26
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 29032610 - 29032965
Alignment:
| Q |
1 |
gagataagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032610 |
gagataagagacccacattccaaagaacgccgctggctcggaactttcgataccgccgaacaagctgcttgcgcctacgactccgccgctctatccatgc |
29032709 |
T |
|
| Q |
101 |
gcggttccaaagctcgaaccaatttcttctatcccgaaaccaccgaacaaaaccttcttcatccatgccataatcataagcagcaaaaatctcaacaccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29032710 |
gcggttccaaagctcgaaccaatttcttctatcccgaaacaaccgaacaaaaccttcttcatccattccataatcataagcagcaaaaatctcaacaccg |
29032809 |
T |
|
| Q |
201 |
ccatgtcactaagttcaacagtggtgattttcttaaccacacttgttcaaaccctaacccttgcgtggttccaccttttgttcaaaacaagcctaataac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29032810 |
ccatgtcactaagttcaacagtggtgattttcttaaccacacttgttcaaaccctaacccttgtttggttccaccttttgttcaaaacaagcctaataac |
29032909 |
T |
|
| Q |
301 |
actatttcttcctctagctcctccaacgttaatattactgaagaaattattgatga |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29032910 |
actatttcttcctctagctcctccaacgttaatattactgaagaaattattgatga |
29032965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14158612 - 14158661
Alignment:
| Q |
1 |
gagataagagacccacattccaaagaacgccgctggctcggaactttcga |
50 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||| ||||| ||||| |
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| T |
14158612 |
gagataagagaccctcagtccaaagaacgccgctggcttggaaccttcga |
14158661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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