View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_27 (Length: 359)
Name: NF1576_low_27
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 35 - 343
Target Start/End: Complemental strand, 45236737 - 45236429
Alignment:
| Q |
35 |
ttaaactttactttatctttcgttataaaa-tagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatctaaatggccataatttat |
133 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45236737 |
ttaaactttactttatctttcgttataaaaatagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatctaaatggccataatttat |
45236638 |
T |
|
| Q |
134 |
gggtaaaattcccaattccatacctgaccagcttgtgatgaaacaaaagcaatagaagcaggtaaagtatatttcctattcttcttcatatgaggcaaag |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45236637 |
gggtaaaattcccaattccatacctgaccagcttgtgatgaaacaaa-gcaatagaagcaggtaaagtatctttcctattcttcttcatatgaggcaaag |
45236539 |
T |
|
| Q |
234 |
cagctttaatcatattcaaacaacccatcaaattaacatcaatcgtaaacttgacatcactcaattccaacgcataaaacactccatgattcaacaacaa |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45236538 |
cagctttaatcatattcaaacaacccatcaaattaacatcaatcgtaaacttgacatcactcaattccaacgcataaaacactccatgattcaacaacaa |
45236439 |
T |
|
| Q |
334 |
cacatcaatg |
343 |
Q |
| |
|
|||||||||| |
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| T |
45236438 |
cacatcaatg |
45236429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 37788839 - 37788794
Alignment:
| Q |
39 |
actttactttatctttcgttataaaatagcttatacacaaacactt |
84 |
Q |
| |
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|||||| ||||||||| ||||||||||| |||||||| |||||||| |
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| T |
37788839 |
actttattttatcttttgttataaaataacttatacataaacactt |
37788794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 2128341 - 2128397
Alignment:
| Q |
38 |
aactttactttatctttcgttata-aaatagcttatacacaaacacttatggtataa |
93 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||| |||| |||||| ||||| |
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|
| T |
2128341 |
aactttattttatcttttgttatagaaatagcttatacataaacgcttatgctataa |
2128397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 38 - 343
Target Start/End: Complemental strand, 7825232 - 7824903
Alignment:
| Q |
38 |
aactttactttatctttcgttataaaa-tagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatctaaa--tggccataat----- |
129 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||| ||| |||||||||| |
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|
| T |
7825232 |
aactttactttatcttttgttataaaaatagcttatacagaaacacttatggtataaacttcaaattaagctgtttatccaaacatggccataataaaca |
7825133 |
T |
|
| Q |
130 |
----ttatgggtaaaattcccaattccatacctgaccagcttgtgatgaaacaaaagcaatagaagcaggtaaagtatatttcctattcttcttcatatg |
225 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || |
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|
| T |
7825132 |
taatttatctgtaaaatttccaactccatacctgaccagcttgtgatgaaacaaaagcaatagaagcaggtaaagtatctttcctatt---cttcatttg |
7825036 |
T |
|
| Q |
226 |
aggcaaagcagctttaatcatattcaaacaacccatcaaattaacatcaatcgtaaacttgacatcact---------------caattccaacgcataa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
7825035 |
cggcaaagcagctttaatcatattcaaacaacccatcaagttaacatcaatcgtaaacttcacatcactcaattccattttctccaattccaacgcataa |
7824936 |
T |
|
| Q |
311 |
aacactccatgattcaacaacaacacatcaatg |
343 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
7824935 |
aacacaccatgattcaacaacaacacatcaatg |
7824903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 34619476 - 34619546
Alignment:
| Q |
46 |
tttatctttcgttata-aaatagcttatacacaaacacttatggtataaagtgcaaattaagctgtttatc |
115 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| || || ||||| ||||| |||||||||||||||||||| |
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|
| T |
34619476 |
tttatcttttgttatagaaatggcttatacataagcaattatgctataagctgcaaattaagctgtttatc |
34619546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 2223127 - 2223079
Alignment:
| Q |
39 |
actttactttatctttcgttata-aaatagcttatacacaaacacttat |
86 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||| |||||||||| |
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|
| T |
2223127 |
acttttctttatcttttgttatagaaatagcttatacataaacacttat |
2223079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 4991042 - 4991082
Alignment:
| Q |
47 |
ttatctttcgttataaaa-tagcttatacacaaacacttat |
86 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
4991042 |
ttatcttttgttataaaaatagcttatacacaaacacttat |
4991082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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