View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_low_29 (Length: 343)

Name: NF1576_low_29
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_low_29
NF1576_low_29
[»] chr3 (11 HSPs)
chr3 (16-301)||(55147116-55147401)
chr3 (82-301)||(30716429-30716648)
chr3 (16-241)||(18895856-18896098)
chr3 (194-301)||(48162042-48162149)
chr3 (194-300)||(183224-183330)
chr3 (194-301)||(45032015-45032122)
chr3 (194-301)||(18945637-18945744)
chr3 (16-61)||(18896099-18896144)
chr3 (16-61)||(55147402-55147447)
chr3 (209-301)||(4950340-4950431)
chr3 (209-301)||(53561925-53562017)
[»] scaffold0251 (2 HSPs)
scaffold0251 (16-241)||(1167-1409)
scaffold0251 (18-61)||(1123-1166)
[»] chr8 (7 HSPs)
chr8 (16-240)||(44118540-44118781)
chr8 (194-301)||(8319015-8319122)
chr8 (184-241)||(20494838-20494895)
chr8 (181-240)||(23878272-23878331)
chr8 (16-61)||(44118494-44118539)
chr8 (257-301)||(20495006-20495050)
chr8 (257-301)||(44118890-44118934)
[»] chr7 (11 HSPs)
chr7 (16-239)||(17733177-17733417)
chr7 (18-241)||(31593067-31593307)
chr7 (117-240)||(3939084-3939200)
chr7 (194-301)||(41958272-41958379)
chr7 (194-301)||(46528899-46529006)
chr7 (194-301)||(1804476-1804584)
chr7 (181-301)||(11409255-11409375)
chr7 (16-61)||(17733131-17733176)
chr7 (257-301)||(13952932-13952976)
chr7 (257-301)||(17733542-17733586)
chr7 (209-301)||(45414814-45414905)
[»] chr1 (13 HSPs)
chr1 (18-241)||(27108548-27108788)
chr1 (16-241)||(31386036-31386253)
chr1 (16-242)||(18240164-18240391)
chr1 (16-240)||(42464482-42464707)
chr1 (194-267)||(42057873-42057946)
chr1 (16-61)||(27108500-27108545)
chr1 (16-61)||(31386254-31386299)
chr1 (209-301)||(46200603-46200694)
chr1 (22-61)||(18240392-18240431)
chr1 (257-301)||(13706656-13706700)
chr1 (257-301)||(15292264-15292308)
chr1 (257-301)||(42058110-42058154)
chr1 (257-301)||(42464810-42464854)
[»] scaffold0184 (2 HSPs)
scaffold0184 (16-241)||(27765-28007)
scaffold0184 (18-61)||(27721-27764)
[»] scaffold0078 (2 HSPs)
scaffold0078 (16-241)||(44837-45079)
scaffold0078 (18-61)||(45080-45123)
[»] chr6 (5 HSPs)
chr6 (16-241)||(7810763-7811005)
chr6 (194-301)||(5614376-5614483)
chr6 (200-301)||(1259480-1259581)
chr6 (194-240)||(19273114-19273160)
chr6 (16-61)||(7810717-7810762)
[»] chr2 (8 HSPs)
chr2 (16-228)||(31508577-31508806)
chr2 (194-300)||(40614149-40614251)
chr2 (194-267)||(4172093-4172166)
chr2 (197-290)||(26171939-26172032)
chr2 (16-61)||(31508531-31508576)
chr2 (257-301)||(29899652-29899696)
chr2 (257-301)||(31508927-31508971)
chr2 (209-301)||(34457506-34457596)
[»] scaffold0537 (2 HSPs)
scaffold0537 (16-154)||(1331-1469)
scaffold0537 (18-61)||(1287-1330)
[»] chr5 (9 HSPs)
chr5 (16-241)||(10826187-10826413)
chr5 (194-301)||(19871020-19871127)
chr5 (202-301)||(9041816-9041915)
chr5 (164-240)||(42449294-42449375)
chr5 (16-72)||(42449182-42449238)
chr5 (194-267)||(23062959-23063032)
chr5 (19-61)||(10826144-10826186)
chr5 (257-301)||(42449483-42449527)
chr5 (16-53)||(42449155-42449192)
[»] chr4 (5 HSPs)
chr4 (175-241)||(54603484-54603550)
chr4 (194-301)||(39390308-39390414)
chr4 (194-301)||(31302816-31302924)
chr4 (209-301)||(12027776-12027867)
chr4 (257-301)||(54603667-54603711)
[»] scaffold0013 (1 HSPs)
scaffold0013 (181-240)||(86309-86368)
[»] scaffold1813 (1 HSPs)
scaffold1813 (226-301)||(312-387)
[»] scaffold0916 (1 HSPs)
scaffold0916 (257-301)||(786-830)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 55147401 - 55147116
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  55147401 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttattctacattatggttatcattatgtcaaaattatggagcatt 55147302  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataaataaaatttaatataacacattcatcaaactttatgtaacataccacattat 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55147301 attctaacccttacattatcacaatttaaacttaagcatatatgataaatgaaatttaatataacacattcatcaaactttatgtaacataccacattat 55147202  T
Q  216 gtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55147201 gtcattcatcaaacttgccaaaaaatttataaatccaagtctataataattacagcatatatacattataaaattgaacatatttg 55147116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 82 - 301
Target Start/End: Complemental strand, 30716648 - 30716429
Alignment:
Q  82 tatggttatcattatgccaaacttatggagcattattctaacccttacattatcacaaattaaacttaagcatatatgataaataaaatttaatataaca 181  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30716648 tatggttatcattatgccaaatttatggagcaatgttctaacccttacattatcacaaattaaacttaagcatatatgataaataaaatttaatataaca 30716549  T
Q  182 cattcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacat 281  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30716548 cattcatcaaactttatgtaatataccatattatgtcattcatcaaacttgccaaaaaatttataaatccaagtctataataattacagcatatatacat 30716449  T
Q  282 tataaaattgaacatatttg 301  Q
    ||||||||||||||||||||    
T  30716448 tataaaattgaacatatttg 30716429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 18896098 - 18895856
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||  |    
T  18896098 ctaatctaacttatgcattcatcaaatctaatctaactacattatcacattatggttattctacattatggttatcattatgtcaaaattatggagccat 18895999  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     || ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  18895998 gttttaacccttacattatcacaaattaaacttaagcatatatgataaattaaactgaggcattcataaaatttaatataacacattcatcaaactttat 18895899  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  18895898 gtaacattccacattatgtcattcatcaaacttgccaaaaaat 18895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 48162149 - 48162042
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||  ||||||||||| | ||||||||| |||||||||||||    
T  48162149 tttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattgaa 48162050  T
Q  294 catatttg 301  Q
     |||||||    
T  48162049 gatatttg 48162042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 183224 - 183330
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||  ||||||||||| | ||||||||| |||||||||||||    
T  183224 tttatataacataccacattatgtcattcttcaaacttgtcaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattgaa 183323  T
Q  294 catattt 300  Q
     ||||||    
T  183324 gatattt 183330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 45032122 - 45032015
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | ||| |||  ||||||||||| | ||||||||| |||||||||||||    
T  45032122 tttatataacataccacattatgtcattcttcaaacttgccaaaaaaattaaaaatcgaagcttataataattataacatatatactttataaaattgaa 45032023  T
Q  294 catatttg 301  Q
     |||||||    
T  45032022 gatatttg 45032015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 18945637 - 18945744
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||||||| | ||  |||  ||||||||||| | | ||||||| |||||||||||||    
T  18945637 tttatataacataccacattatgtcattcttcaaacttgcgaaaaaatttaaaaatttaagcttataataattataacgtatatactttataaaattgaa 18945736  T
Q  294 catatttg 301  Q
     |||||||    
T  18945737 gatatttg 18945744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 18896144 - 18896099
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||    
T  18896144 ctaatctaacttatgaattcatcaaacctaatctaactacattatc 18896099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 55147447 - 55147402
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  55147447 ctaatctaacttatgcattcatcaaacataatctaactacattatc 55147402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 4950340 - 4950431
Alignment:
Q  209 acattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||| | |||||| ||||||||| |  | ||||||   ||||||| ||| | |||||||||||||||||||| ||||||||||    
T  4950340 acattatgtcattctt-aaactttccaaaaaatgtcaaaatccaaccttataatatttataacatatatacattataaaatttaacatatttg 4950431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 53561925 - 53562017
Alignment:
Q  209 acattatgtcattcatcaaacttgccaaaaaatt-tatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||| | ||||||||||||||| | |  | ||||||   ||||||||||| | |||||||||||||||| ||| ||||||||||    
T  53561925 acattatgtcattctt-aaacttgccaaaaaaatgtcaaaatccaaccttataataattataacatatatacattataagatttaacatatttg 53562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 1167 - 1409
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  1167 ctaatctaacttatgcattcaacaaatctaatctaactacattatcatattatggttattctacattatggttatcattatgccaaaattatggagcaat 1266  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     |||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  1267 gttctaacccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 1366  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  1367 gtaacataccacattaagtcattcatcaaacttgccaaaaaat 1409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1123 - 1166
Alignment:
Q  18 aatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  1123 aatctaacttatgcattcatcaaacctaatctaactacattatc 1166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 44118540 - 44118781
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  44118540 ctaatctaacttatgcattcatcaaatctaatctaactacattatcacattatggttattctacattatggttatcattatgccaaaattatggagcaat 44118639  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||| |||||||||||    
T  44118640 gttctagcccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcgtcaaactttat 44118739  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44118740 gtaacataccacattatgtcattcatcaaacttgccaaaaaa 44118781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 8319015 - 8319122
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||| | |||||||||||||||  |||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||||||    
T  8319015 tttatataacacatcacattatgtcattctccaaacttgccaaaaaatttaaaaatccaagtttataataattacaacatatatacattataaaattgaa 8319114  T
Q  294 catatttg 301  Q
    ||||||||    
T  8319115 catatttg 8319122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 20494838 - 20494895
Alignment:
Q  184 ttcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20494838 ttcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaat 20494895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 23878331 - 23878272
Alignment:
Q  181 acattcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaa 240  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23878331 acattcatcaaactttatgtaacatgcaacattatgtcattcatcaaacttgccaaaaaa 23878272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 44118494 - 44118539
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||    
T  44118494 ctaatctaacttatgtattcatcaaacctaatctaactacattatc 44118539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 20495006 - 20495050
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  20495006 tataatcattataacatacatacattataaaattgaacatatttg 20495050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 44118890 - 44118934
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  44118890 tataatcattataacatacatacattataaaattgaacatatttg 44118934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 17733177 - 17733417
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |    
T  17733177 ctaatctaacttatgcattcatcaaatctaatctaactacattatcacattatgattattctacattatggttatcattatgccaaaattatggagcaat 17733276  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgata-----------------aataaaatttaatataacacattcatcaaactttat 198  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||    
T  17733277 gttctaacccttaccttatcacaaattaaacttaagcatatatgataaattaaacttaggcattaataaaatttaatataacacattcatcaaactttat 17733376  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17733377 gtaacataccacattatgtcattcatcaaacttgccaaaaa 17733417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 31593307 - 31593067
Alignment:
Q  18 aatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcattat 117  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |    
T  31593307 aatctaacttatgcattcatcaaacctaatctaactacattatcacattatggttattctacattatggttatcattatgccaaaattatggagcaatgt 31593208  T
Q  118 tctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttatgt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||                 ||||||| |||| ||||| ||||||| ||||||||||    
T  31593207 tctaacccttacattatcacaaattaaacttatgcatatatgataaattaaacttaggcattcataaaatctaatttaacatattcatccaactttatgt 31593108  T
Q  201 aacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  31593107 aagataccacattatgtcattcatcaaacttgccaaaaaat 31593067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 3939200 - 3939084
Alignment:
Q  117 ttctaacccttacattatcacaaattaaacttaagcatatatgataaataaaatttaatataacacattcatcaaactttatgtaacataccacattatg 216  Q
    ||||||||||||||||||||||||||||||||| ||||  ||       |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  3939200 ttctaacccttacattatcacaaattaaacttaggcattcat-------aaaacttaatataacaaattcatcaaactttatgtaacataccacattatg 3939108  T
Q  217 tcattcatcaaacttgccaaaaaa 240  Q
    ||||||||||||||||| ||||||    
T  3939107 tcattcatcaaacttgctaaaaaa 3939084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 41958379 - 41958272
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||  ||||||||||| | ||||||||| |||||||||||||    
T  41958379 tttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattgaa 41958280  T
Q  294 catatttg 301  Q
     |||||||    
T  41958279 gatatttg 41958272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 46528899 - 46529006
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||  ||||||||||| | ||||||||| |||||||||||||    
T  46528899 tttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataataattataacatatatactttataaaattgaa 46528998  T
Q  294 catatttg 301  Q
     |||||||    
T  46528999 gatatttg 46529006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 1804476 - 1804584
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaattt-atagatccaagtctataataattacagcatatatacattataaaattga 292  Q
    ||||| |||| ||||||||||| | |||| |||||||||||||||||||| | | |||||||  ||||||||||| | ||||||||| ||||||||||||    
T  1804476 tttatataacgtaccacattatattattcttcaaacttgccaaaaaatttaaaaaatccaagcttataataattataacatatatactttataaaattga 1804575  T
Q  293 acatatttg 301  Q
    | |||||||    
T  1804576 agatatttg 1804584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 11409255 - 11409375
Alignment:
Q  181 acattcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatataca 280  Q
    |||||||||| |||||||||||| ||  ||||||||| ||||||||||||||||||||||  || | |||||||  || |||  ||| | |||||||||     
T  11409255 acattcatcatactttatgtaacgtataacattatgtaattcatcaaacttgccaaaaaaagtaaaaatccaagcttagaatccttataacatatatact 11409354  T
Q  281 ttataaaattgaacatatttg 301  Q
    |||||||||| ||||||||||    
T  11409355 ttataaaatttaacatatttg 11409375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 17733131 - 17733176
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  17733131 ctaatctaacttatgcattcatcaaacctaatctaactacattatc 17733176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 13952932 - 13952976
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  13952932 tataatcattataacatacatacattataaaattgaacatatttg 13952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 17733542 - 17733586
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  17733542 tataatcattataacatacatacattataaaattgaacatatttg 17733586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 45414905 - 45414814
Alignment:
Q  209 acattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||  | |||||||||||||||| |  | ||||||   ||||| ||||| | ||||| |||||||||||||| ||||||||||    
T  45414905 acattatgtcattttt-aaacttgccaaaaaatgtcaaaatccaaccttataaaaattataacatatgtacattataaaatttaacatatttg 45414814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 27108548 - 27108788
Alignment:
Q  18 aatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcattat 117  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |    
T  27108548 aatctaacttatgcattcatcaaatctaatctaattacattatcacattatggttattctacattatggttatcattatgccaaaattatggagcaatgt 27108647  T
Q  118 tctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||    
T  27108648 tctaacccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttatgt 27108747  T
Q  201 aacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  27108748 aacataccacattatgtcattcatcaaacttgcaaaaaaat 27108788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 31386253 - 31386036
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  31386253 ctaatctaacttatgcattcatcaaatctaatctaagtacattatcacattatggttattctacattatggttatcattatgccaaaattatggagcaat 31386154  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataaataaaatttaatataacacattcatcaaactttatgtaacataccacattat 215  Q
     |||||||||||| ||||||||||||||||||||  |||  ||        ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31386153 gttctaacccttatattatcacaaattaaacttagacattcat--------aaaattaatataacacattcatcaaactttatgtaacataccacattat 31386062  T
Q  216 gtcattcatcaaacttgccaaaaaat 241  Q
    ||||||||||||||||| ||||||||    
T  31386061 gtcattcatcaaacttgtcaaaaaat 31386036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 18240391 - 18240164
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||                |||||||||||||| |||||||||| |    
T  18240391 ctaatctaacttatgcattcaacaaatctgatctaactacattatcacattatggtt----------------atcattatgccaaaattatggagcaat 18240308  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     |||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  18240307 gttctaacccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 18240208  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaatt 242  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  18240207 gtaacataccacattatgtcattcatcaaacttgcaaaaaaatt 18240164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 42464482 - 42464707
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||                ||||||||| |||| |||||||||| |    
T  42464482 ctaatctaacttatgcattcatcaaatctaatctaactacattatcacattatggtt----------------atcattatgtcaaaattatggagcaat 42464565  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataaat-----------------aaaatttaatataacacattcatcaaactttat 198  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||    
T  42464566 gttctagcccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 42464665  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42464666 gtaacataccacattatgtcattcatcaaacttgccaaaaaa 42464707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 42057873 - 42057946
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataatta 267  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||| | |||||||| |||| ||||||    
T  42057873 tttatataacataccacattatgttattcttcaaacttgccaaaaaatttaaaaatccaagtttatagtaatta 42057946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 27108500 - 27108545
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  27108500 ctaatctaacttatgcattcatcaaacctaatctaactacattatc 27108545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 31386299 - 31386254
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  31386299 ctaatctaacttatgcattcatcaaacctaatctaactacattatc 31386254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 46200603 - 46200694
Alignment:
Q  209 acattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||| | |||||||||||||||| |  | ||||||   | ||||||||| | |||||||||||||||| ||| ||||||||||    
T  46200603 acattatgtcattctt-aaacttgccaaaaaatgtcaaaatccaaccttttaataattataacatatatacattataagatttaacatatttg 46200694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 18240431 - 18240392
Alignment:
Q  22 taacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  18240431 taacttatgcattcatcaaacctaatctaactacattatc 18240392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 13706700 - 13706656
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||    
T  13706700 tataataattataacatatatacattataagatttaacatatttg 13706656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 15292264 - 15292308
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  15292264 tataatcattataacatacatacattataaaattgaacatatttg 15292308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 42058110 - 42058154
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  42058110 tataatcattataacatacatacattataaaattgaacatatttg 42058154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 42464810 - 42464854
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  42464810 tataattattataacatacatacattataaaattgaacatatttg 42464854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 27765 - 28007
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||| |    
T  27765 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatgtttattctacattatggttatcattatgccaaaattattgagcaat 27864  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     || ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  27865 gttttaacccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 27964  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  27965 gtaacataccacattacgtcattcatcaaacttgccaaaaaat 28007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27721 - 27764
Alignment:
Q  18 aatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  27721 aatctaacttatgcattcatcaaacctaatctaactacattatc 27764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 45079 - 44837
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||| |    
T  45079 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatgtttattctacattatggttatcattatgccaaaattattgagcaat 44980  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     || ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  44979 gttttaacccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 44880  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  44879 gtaacataccacattacgtcattcatcaaacttgccaaaaaat 44837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 45123 - 45080
Alignment:
Q  18 aatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  45123 aatctaacttatgcattcatcaaacctaatctaactacattatc 45080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 7810763 - 7811005
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  7810763 ctaatctaacttatgcattcatcaaatctaatctaattacattatcacattatggttattctacattatggttatcattatgccaaaattatggagcaat 7810862  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     |||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||| ||||||||||||||||    
T  7810863 gttctaacccttacattatcacaaattaaacttaagcatatatgataaattaaactcaagcattcataaaatttaatataacaaattcatcaaactttat 7810962  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  7810963 gtaacataccacattatgtcgttcatcaaacttgccaaaaaat 7811005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 5614483 - 5614376
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||| ||| | |||||||| ||||||||||||| |||||||||||||||||||||||    
T  5614483 tttatataacataccacattatttcattcttcaaacttgccaaaaaaattaaaaatccaagtttataataattacaacatatatacattataaaattgaa 5614384  T
Q  294 catatttg 301  Q
    ||||||||    
T  5614383 catatttg 5614376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 1259480 - 1259581
Alignment:
Q  200 taacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatt 299  Q
    |||||||||||||||||| |||| ||||||||| |||||||| || | || ||||  ||||||||||| | |||||||||||||||||||| ||||||||    
T  1259480 taacataccacattatgttattcttcaaacttggcaaaaaatgtaaaaattcaagcttataataattataacatatatacattataaaattaaacatatt 1259579  T
Q  300 tg 301  Q
    ||    
T  1259580 tg 1259581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 19273114 - 19273160
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaa 240  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||    
T  19273114 tttatgtaacataccacattatttcattcttcaaacttgccaaaaaa 19273160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 7810717 - 7810762
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||| ||||| |||| ||| |||||||||||||||    
T  7810717 ctaatctaacttatgtattcatcaaacctattctaactacattatc 7810762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 31508577 - 31508806
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  31508577 ctaatctaacttatgcattcatcaaatctaatctaactacattatcacattatggttgttctacattatggttatcattatgccaaaattatggagcaat 31508676  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     |||||||||||||||||||||| ||||||||||||||| ||||||||                 |||||||||||||||||||||||||||||||||||    
T  31508677 gttctaacccttacattatcacacattaaacttaagcatgtatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 31508776  T
Q  199 gtaacataccacattatgtcattcatcaaa 228  Q
    |||||||| |||||| ||||||||| ||||    
T  31508777 gtaacatatcacattgtgtcattcaacaaa 31508806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 40614149 - 40614251
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||   |||||||  ||||||||||||| |||||||||||||||||||||||    
T  40614149 tttatataacataccacattatgtcattcttcaaactt-ccaaaaaattta---atccaagcttataataattacaacatatatacattataaaattgaa 40614244  T
Q  294 catattt 300  Q
    |||||||    
T  40614245 catattt 40614251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 4172166 - 4172093
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataatta 267  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||||||| | |||||||  |||||||||||    
T  4172166 tttatataacataccacattatgtcattcttcaaacttgctaaaaaatttaaaaatccaagcttataataatta 4172093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 26172032 - 26171939
Alignment:
Q  197 atgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaatt 290  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || | ||| ||   || ||| |||| ||||||||||||| ||||||||    
T  26172032 atgtaacataccacattatgtcattcttcaaacttgccaaaaaatataaaaatctaaacttagaatcattatagcatatatacatcataaaatt 26171939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 31508531 - 31508576
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||    
T  31508531 ctaatctaacttatgccttcatcaaacctaatctaactacattatc 31508576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 29899696 - 29899652
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||||||||||||||||||||||||||||||    
T  29899696 tataatcattataacatatatacattataaaattgaacatatttg 29899652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 31508927 - 31508971
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  31508927 tataatcattataacatacatacattataaaattgaacatatttg 31508971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 34457596 - 34457506
Alignment:
Q  209 acattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||| | |||||||| ||||||| |  | ||||||   ||||||||||| | |||||||||||||| ||||| ||||||||||    
T  34457596 acattatgtcattctt-aaacttgcaaaaaaatgtcaaaatccaaccttataataattataacatatatacattat-aaatttaacatatttg 34457506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0537 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 1331 - 1469
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |    
T  1331 ctaatctaacttatgcattcaacaaatgtaatctaactacattatcacattatggttattctacattatggttatgattatgccaaaattatggagcaat 1430  T
Q  116 attctaacccttacattatcacaaattaaacttaagcat 154  Q
     ||||||||||||||||||||||||||||||||||||||    
T  1431 gttctaacccttacattatcacaaattaaacttaagcat 1469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0537; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1287 - 1330
Alignment:
Q  18 aatctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  1287 aatctaacttatgcattcatcaaacctaatctaactacattatc 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 10826187 - 10826413
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggttcttctacattatggttatcattatgccaaacttatggagcatt 115  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||                ||||||||||||||||||||| |||||||| | |    
T  10826187 ctaatctaacttatgcattcatcaaatctaatctaactatattatcacat----------------tatggttatcattatgccaaaattatggagtaat 10826270  T
Q  116 attctaacccttacattatcacaaattaaacttaagcatatatgataa-----------------ataaaatttaatataacacattcatcaaactttat 198  Q
     |||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||    
T  10826271 gttctaacccttacattatcacaaattaaacttaagcatatatgataaattaaacttaggcattcataaaatttaatataacacattcatcaaactttat 10826370  T
Q  199 gtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  10826371 gtaacataccacattacgtcattcctcaaacttgccaaaaaat 10826413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 19871127 - 19871020
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||     
T  19871127 tttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagtttataataattacaacatatatacattataaaattgat 19871028  T
Q  294 catatttg 301  Q
    ||||||||    
T  19871027 catatttg 19871020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 9041816 - 9041915
Alignment:
Q  202 acataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    ||||||||||||||||||||| ||||||||||||||||||| | | |||||||  ||||||||||| | ||||||||| ||||||||||||| |||||||    
T  9041816 acataccacattatgtcattcttcaaacttgccaaaaaattaaaaaatccaagcttataataattataacatatatactttataaaattgaagatatttg 9041915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 42449294 - 42449375
Alignment:
Q  164 ataaaatttaatataacacattcatcaaactttatgtaacata-----ccacattatgtcattcatcaaacttgccaaaaaa 240  Q
    |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||| |||||    
T  42449294 ataaaatttaatataacacattcatcaaactttatgtaacataacatgccacattatgtcattcatcaaacttgccgaaaaa 42449375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 42449182 - 42449238
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaactacattatcacattatggtt 72  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42449182 ctaatctaacttatgcattcatcaaatctaatctaactacattatcacattatggtt 42449238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 23063032 - 23062959
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataatta 267  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||  |||||||||||    
T  23063032 tttatataacataccacattatgtcattcttcaaacttgccaaaaaatttaaaaatccaagcttataataatta 23062959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 10826144 - 10826186
Alignment:
Q  19 atctaacttatgcattcaacaaatctaatctaactacattatc 61  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  10826144 atctaacttatgcattcatcaaacctaatctaactacattatc 10826186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 42449483 - 42449527
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||||||||||||||||||||||||||||||    
T  42449483 tataatcattataacatatatacattataaaattgaacatatttg 42449527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42449155 - 42449192
Alignment:
Q  16 ctaatctaacttatgcattcaacaaatctaatctaact 53  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  42449155 ctaatctaacttatgcattcatcaaacctaatctaact 42449192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 54603484 - 54603550
Alignment:
Q  175 tataacacattcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54603484 tataacacattcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaat 54603550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 194 - 301
Target Start/End: Original strand, 39390308 - 39390414
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaa 293  Q
    ||||| ||| ||||||||||||||||||| | ||||||||||||||||||| | || ||||| ||||||||||| | |||||||||||||||||||||||    
T  39390308 tttatataaaataccacattatgtcattcttaaaacttgccaaaaaatttaaa-attcaagtttataataattagaacatatatacattataaaattgaa 39390406  T
Q  294 catatttg 301  Q
    ||||||||    
T  39390407 catatttg 39390414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 31302924 - 31302816
Alignment:
Q  194 tttatgtaacataccacattatgtcattcatcaaacttgccaaaaa-atttatagatccaagtctataataattacagcatatatacattataaaattga 292  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||  |||| | |||||||  ||||||||||| | |||||||||||||||| ||| |    
T  31302924 tttatataacataccacattatgtcattcttcaaacttgccaaaaatttttaaaaatccaagcttataataattataacatatatacattataagattta 31302825  T
Q  293 acatatttg 301  Q
    |||||||||    
T  31302824 acatatttg 31302816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 12027776 - 12027867
Alignment:
Q  209 acattatgtcattcatcaaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||| | |||||||||||||||| |  | ||||||   ||||||||||| |  ||||||||||||||| ||| ||||||||||    
T  12027776 acattatgtcattctt-aaacttgccaaaaaatgtcaaaatccaaccttataataattataatatatatacattataagatttaacatatttg 12027867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 54603667 - 54603711
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||| ||||||||||||||||||||||||||    
T  54603667 tataatcattataacatacatacattataaaattgaacatatttg 54603711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 86309 - 86368
Alignment:
Q  181 acattcatcaaactttatgtaacataccacattatgtcattcatcaaacttgccaaaaaa 240  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  86309 acattcatcaaactttatgtaagatataacattatgtcattcatcaaacttgccaaaaaa 86368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1813 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 312 - 387
Alignment:
Q  226 aaacttgccaaaaaatttatagatccaagtctataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||||||||||||| |  | |||||| | ||||||||||| |||||||||||||||||| ||| ||||||||||    
T  312 aaacttgccaaaaaatgtcaaaatccaactttataataattatagcatatatacattataagatttaacatatttg 387  T

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Target: scaffold0916 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 830 - 786
Alignment:
Q  257 tataataattacagcatatatacattataaaattgaacatatttg 301  Q
    |||||| |||| | |||||||||||||||||||||||||||||||    
T  830 tataatcattataacatatatacattataaaattgaacatatttg 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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