View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_30 (Length: 342)
Name: NF1576_low_30
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 6272684 - 6273003
Alignment:
| Q |
13 |
aatatatcggttttcaagaatttaaccaacttgaggagcctttggtttgaaaaagtttccatctcacacttatcaggcatagtcatggaaagcttgagga |
112 |
Q |
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| T |
6272684 |
aatatatcggttttcaagaatttaaccaacttgaggagcctttggtttgaaaaagtttccatcccacacttatcaggcatagtcatggaaagcttgagga |
6272783 |
T |
|
| Q |
113 |
aattgtttatagtcctttgtaagatcaacaacagtcttgaaggaaaagattcaaacatcgccgatatcttccctaacatctcagagctcacgcttgatca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6272784 |
aattgtttatagtcctttgtaagatcaacaacagtcttgaaggaaaagattcaaacatcgccgatatcttccctaacatctcagagctcacgcttgatca |
6272883 |
T |
|
| Q |
213 |
ctgtgaggatgtaaccgagttaccttcaagcatttgcaggatacagtcactacaaaacttgagtctcactaactgtcatagtttaacacaattacctatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
6272884 |
ctgtgaggatgtaaccgagttaccttcaagcatttgcaggatacagtcactacaaaacttgagtcttactaactgtcatagtttaacacgattacctatt |
6272983 |
T |
|
| Q |
313 |
gaattaggctcactaagata |
332 |
Q |
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|||||||||||||||||||| |
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| T |
6272984 |
gaattaggctcactaagata |
6273003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 6264196 - 6264299
Alignment:
| Q |
178 |
atcttccctaacatctcagagctcacgcttgatcactgtgaggatgtaaccgagttaccttcaagcatttgcaggatacagtcactacaaaacttgagtc |
277 |
Q |
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||||| |||||| |||| ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
6264196 |
atctttcctaacctctctgagatcactcttgatcattgtgatgatgtaacttctttaccctcaagcatttgtaggatacaatcactccaaaacttgagtc |
6264295 |
T |
|
| Q |
278 |
tcac |
281 |
Q |
| |
|
|||| |
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| T |
6264296 |
tcac |
6264299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 6264040 - 6264093
Alignment:
| Q |
22 |
gttttcaagaatttaaccaacttgaggagcctttggtttgaaaaagtttccatc |
75 |
Q |
| |
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|||||||| ||||| |||||||||| ||||| ||| ||||||||||||||||| |
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| T |
6264040 |
gttttcaacaatttggccaacttgagaagcctgtggcttgaaaaagtttccatc |
6264093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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