View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_38 (Length: 302)
Name: NF1576_low_38
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 38230019 - 38229762
Alignment:
| Q |
19 |
cttaattaatatgggcgatccattcagtcaaaagatcttttatattggtatttatattaataatttccaaatgcaatttggaaacaatccgattttattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38230019 |
cttaattaatatgggcgatccattcagtcaaaagatcttttatattggtatttatattaataatttccaaatgcaatttggaaacaatccgattttattg |
38229920 |
T |
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| Q |
119 |
attccaaaattatgaccattgtacaataaaacaatctatataggaccttagtttaacccttatagttgcaaataaaattgagggatttgactg---nnnn |
215 |
Q |
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| T |
38229919 |
attccaaaattatgaccattgtacaataaaacaatctatataggaccttagtttaacctttatagtttcaaataaaattgaggcatttgactgaaaaaaa |
38229820 |
T |
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| Q |
216 |
nnnntggaggttttgagcttaaacaaaaacatgttgttgaagatgattatgatggcta |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38229819 |
aaaatggaggttttgagcttaaacaaaaacatgttgttgaagatgattatgatggcta |
38229762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 134 - 273
Target Start/End: Complemental strand, 38223491 - 38223350
Alignment:
| Q |
134 |
ccattgtacaataaaacaatctatataggaccttagtttaacccttatagttgcaaataaaattgagggatttgactg--nnnnnnnntggaggttttga |
231 |
Q |
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| T |
38223491 |
ccattgtacaataaaataatctatataggaccttagtttaacccttatagttgcaaataaaattgaggcatttgactgaaaaaaaaaatggaggttttga |
38223392 |
T |
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| Q |
232 |
gcttaaacaaaaacatgttgttgaagatgattatgatggcta |
273 |
Q |
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| T |
38223391 |
gcttaaacaaaaacatgttgttgaagatgattatgatggcta |
38223350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 38223631 - 38223516
Alignment:
| Q |
19 |
cttaattaatatgggcgatccattcagtcaaaagatcttttatattggtatttatattaataatttccaaatgcaatttggaaacaatccgattttattg |
118 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38223631 |
cttaattaatatgggcgatacattcggtcaaaaaatcttttatattggtatttatattaataatttccaaatgcaatttggaaacaatctgattttattg |
38223532 |
T |
|
| Q |
119 |
attccaaaattatgac |
134 |
Q |
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|||||||| ||||||| |
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| T |
38223531 |
attccaaatttatgac |
38223516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 38160126 - 38160073
Alignment:
| Q |
220 |
tggaggttttgagcttaaacaaaaacatgttgttgaagatgattatgatggcta |
273 |
Q |
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|||||| ||||||||| |||||||| |||||||||| ||||||||||| ||||| |
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| T |
38160126 |
tggaggctttgagcttgaacaaaaaaatgttgttgatgatgattatgacggcta |
38160073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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