View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_low_4 (Length: 748)

Name: NF1576_low_4
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_low_4
NF1576_low_4
[»] chr8 (5 HSPs)
chr8 (259-428)||(5567199-5567370)
chr8 (600-728)||(5567909-5568037)
chr8 (421-539)||(5567729-5567847)
chr8 (19-121)||(5571977-5572077)
chr8 (181-239)||(5584121-5584182)
[»] chr2 (1 HSPs)
chr2 (604-667)||(21549260-21549327)
[»] chr5 (1 HSPs)
chr5 (610-654)||(4928033-4928077)
[»] chr4 (1 HSPs)
chr4 (611-663)||(24413070-24413122)
[»] chr1 (1 HSPs)
chr1 (611-663)||(8531561-8531613)
[»] chr6 (1 HSPs)
chr6 (417-462)||(26344931-26344976)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 4e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 259 - 428
Target Start/End: Original strand, 5567199 - 5567370
Alignment:
Q  259 atacatgagtcttttagattatattggtcatagctt--tgtgcttgacaaggaataatagaaattgagtgtttcatagatcaatcatatgagagtgttgg 356  Q
    |||||||| ||||||||||||||| |||||||||||  |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5567199 atacatgaatcttttagattatataggtcatagcttggtgtggttgaaaaggaataatagaaatcgagtgtttcatagatcaatcatatgagagtgttgg 5567298  T
Q  357 aagaaagggtttgatttgtgaaatttgggaaggaatagagaagggaagagagaagaaattagagagtttatg 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5567299 aagaaagggtttgatttgtgaaatttgggaaggaatagagaagggaagagagaagaaattagatagtttatg 5567370  T

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Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 600 - 728
Target Start/End: Original strand, 5567909 - 5568037
Alignment:
Q  600 gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgactttgtc 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5567909 gaattattcttaacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttctcaatacttcaatacttcaatcgttagtgacattgtc 5568008  T
Q  700 attgcatttgcaatttaaaacatttgtct 728  Q
    |||||||||||||||||||||||||||||    
T  5568009 attgcatttgcaatttaaaacatttgtct 5568037  T

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Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 421 - 539
Target Start/End: Original strand, 5567729 - 5567847
Alignment:
Q  421 agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctagttatagcctctattacttgctatgc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5567729 agtttatgagggaaattgaacttgtatattattttggaaaatctctattacaaatatacatgatggcttagctacttatagcctctattacttgctatgc 5567828  T
Q  521 aagttacttgttgttcaag 539  Q
    |||||||||||||||||||    
T  5567829 aagttacttgttgttcaag 5567847  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 5571977 - 5572077
Alignment:
Q  19 gtttgtacttagaaaacttttgtgtaacaactgacaagtttacattttgtctggacgtgcttagtttaacaggtaaatatatataaattgattaggtgaa 118  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||||||| ||    
T  5571977 gtttgtactaagaaaacttttgtgtaacaactgagaagtttacattttgtcgggacgtgcttagtttaataggtaa--atatataaattgattaggttaa 5572074  T
Q  119 ata 121  Q
    |||    
T  5572075 ata 5572077  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 5584121 - 5584182
Alignment:
Q  181 aaatcttgttatgtctatttatagcttgtgtgg---atgaattagttttctgttagtcagtt 239  Q
    ||||||||||||||||||||| ||| |||||||   || |||||||||||||||||| ||||    
T  5584121 aaatcttgttatgtctatttagagcatgtgtggattatcaattagttttctgttagttagtt 5584182  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 604 - 667
Target Start/End: Complemental strand, 21549327 - 21549260
Alignment:
Q  604 tattcttaacactcttccttaattcatgtttgttgaatt----caccatgtccatcatgcttctcaat 667  Q
    ||||||||||||||||||||||||||||||| |||||||    ||||||| |||||||||||||||||    
T  21549327 tattcttaacactcttccttaattcatgttttttgaattcacccaccatgcccatcatgcttctcaat 21549260  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 610 - 654
Target Start/End: Complemental strand, 4928077 - 4928033
Alignment:
Q  610 taacactcttccttaattcatgtttgttgaattcaccatgtccat 654  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  4928077 taacactcttccttaattcatgtttgttgaattcaccatgcccat 4928033  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 663
Target Start/End: Original strand, 24413070 - 24413122
Alignment:
Q  611 aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct 663  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||    
T  24413070 aacactcttccttaattcatgtttgctgaatccaccatgcccatcattcttct 24413122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 663
Target Start/End: Complemental strand, 8531613 - 8531561
Alignment:
Q  611 aacactcttccttaattcatgtttgttgaattcaccatgtccatcatgcttct 663  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||| |||||    
T  8531613 aacactcttccttaattcatgtttgttgaatcaaccatgcccatcattcttct 8531561  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 462
Target Start/End: Original strand, 26344931 - 26344976
Alignment:
Q  417 agagagtttatgagggaaattgaacttgtatattattttggaaaat 462  Q
    |||||||||||| | |||||||| ||||||||||||||||||||||    
T  26344931 agagagtttatgggagaaattgagcttgtatattattttggaaaat 26344976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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