View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_40 (Length: 296)
Name: NF1576_low_40
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 1729387 - 1729636
Alignment:
| Q |
11 |
ttattcttcttgtcaaatagatcttaaataaacaatatgaatgcatccatttcctacaacaattcaccaaacacacgataaattaaacatttgtttagat |
110 |
Q |
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| T |
1729387 |
ttattcttcttgtcaaatagatcttaaataaacaatgtgaatgcatccatttcctacaacaattcaccaaacacacgataaattaaacatttgtttagat |
1729486 |
T |
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| Q |
111 |
tacaagttttttagtgtcaatgtttaaatattgagatttccggtgacagtgcactgaaagtgatgccacaacatttttcaaacagacaaggtaaacaaat |
210 |
Q |
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| T |
1729487 |
ttcaaattttttagtgtcaatgtttaaatattgagacttccggtgacagtgcactgaaagtgatgccacaacatttttcaaacagacaaggtaaacaaat |
1729586 |
T |
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| Q |
211 |
tggatcacctacaattatggtgcatttgcggccataagaaacaaaagaat |
260 |
Q |
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| T |
1729587 |
tggatcacctacaattatggtgcatttgcggccataagaaacaaaagaat |
1729636 |
T |
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