View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_low_42 (Length: 286)
Name: NF1576_low_42
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1576_low_42 |
| |
|
Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 42269208 - 42268930
Alignment:
Q |
1 |
aattgatctctagattccaccaaaaagtttcgacttatagaaaaattcgctcttagtaagttttgataaaacattacacgnnnnnnnccttttactatta |
100 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||| |||||||||||| | || |||||||||||||||||||||||| ||||||||||||| |
|
|
T |
42269208 |
aattgatctctagattccaccaaaaaatttcgacttctagaaaaattcgatttttgtaagttttgataaaacattacacatttttttccttttactatta |
42269109 |
T |
|
Q |
101 |
ttattataaaattcaatcttttgctaaaa--------tgtccaactttaaacctttttaaggaggttcatattagacaactcttagnnnnnnnnagttgt |
192 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
T |
42269108 |
ttattataaaattcaatcttttgctaaaaatagtaaatgtccaactttaaaccttttttaggaggttcatattagacaactcttagtttttttg-gttgt |
42269010 |
T |
|
Q |
193 |
gttaaccctctagttctcaatggaaatagtcttgataattcggagttcgatcagaagataagtaaagtttggtcaataat |
272 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
T |
42269009 |
gttaaccctctagttctcaatggaaatagtcttgataatttggagttcgatcagaagataagtaaagtttggttaataat |
42268930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 18432 times since January 2019
Visitors: 3801