View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_low_47 (Length: 266)

Name: NF1576_low_47
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_low_47
NF1576_low_47
[»] chr6 (14 HSPs)
chr6 (1-128)||(2145722-2145849)
chr6 (128-181)||(1339209-1339262)
chr6 (129-182)||(34969786-34969839)
chr6 (129-181)||(18871278-18871330)
chr6 (128-182)||(35224828-35224882)
chr6 (129-182)||(29638734-29638787)
chr6 (130-182)||(32518748-32518800)
chr6 (127-175)||(34315122-34315170)
chr6 (127-175)||(24025795-24025843)
chr6 (128-175)||(9226562-9226609)
chr6 (129-174)||(33954814-33954859)
chr6 (146-182)||(6015821-6015857)
chr6 (135-171)||(24248810-24248846)
chr6 (129-165)||(26811129-26811165)
[»] chr4 (25 HSPs)
chr4 (123-182)||(10778985-10779044)
chr4 (125-182)||(2526525-2526582)
chr4 (129-181)||(16004533-16004585)
chr4 (127-181)||(38955040-38955094)
chr4 (129-182)||(44998764-44998817)
chr4 (127-182)||(27967864-27967919)
chr4 (129-175)||(42244537-42244583)
chr4 (132-182)||(46630648-46630698)
chr4 (129-182)||(36570002-36570055)
chr4 (130-181)||(21515344-21515395)
chr4 (131-182)||(24292332-24292383)
chr4 (129-175)||(33612884-33612930)
chr4 (128-182)||(48549663-48549717)
chr4 (129-182)||(46221993-46222045)
chr4 (129-182)||(54499928-54499981)
chr4 (129-175)||(46633623-46633669)
chr4 (128-172)||(23639235-23639279)
chr4 (129-181)||(52257487-52257539)
chr4 (132-182)||(45629463-45629513)
chr4 (132-181)||(51282289-51282338)
chr4 (126-175)||(56017147-56017196)
chr4 (135-171)||(1792191-1792227)
chr4 (135-171)||(39103903-39103939)
chr4 (135-171)||(40438999-40439035)
chr4 (135-171)||(53973821-53973857)
[»] chr3 (28 HSPs)
chr3 (129-182)||(49950924-49950977)
chr3 (128-182)||(52782158-52782212)
chr3 (128-181)||(36019415-36019468)
chr3 (129-182)||(51235875-51235928)
chr3 (126-182)||(14460538-14460594)
chr3 (130-182)||(35352191-35352243)
chr3 (128-182)||(32720340-32720394)
chr3 (129-175)||(35320360-35320406)
chr3 (129-181)||(33830885-33830937)
chr3 (127-182)||(44500133-44500188)
chr3 (124-175)||(45927581-45927632)
chr3 (127-182)||(48388757-48388812)
chr3 (128-175)||(50465833-50465880)
chr3 (129-175)||(44962965-44963011)
chr3 (129-175)||(53376951-53376997)
chr3 (129-182)||(37567572-37567625)
chr3 (129-181)||(48925411-48925463)
chr3 (128-175)||(2667986-2668033)
chr3 (132-182)||(53186358-53186408)
chr3 (129-182)||(9322429-9322482)
chr3 (134-175)||(48990655-48990696)
chr3 (135-182)||(55365380-55365427)
chr3 (128-170)||(347056-347098)
chr3 (128-182)||(26409629-26409683)
chr3 (128-175)||(7157037-7157084)
chr3 (128-175)||(54009267-54009314)
chr3 (132-182)||(50560364-50560414)
chr3 (135-171)||(26001201-26001237)
[»] chr7 (24 HSPs)
chr7 (126-182)||(3062247-3062303)
chr7 (128-182)||(9915512-9915566)
chr7 (128-182)||(9923424-9923478)
chr7 (128-182)||(42039656-42039710)
chr7 (128-182)||(45196803-45196857)
chr7 (129-182)||(1282539-1282592)
chr7 (130-182)||(25867259-25867311)
chr7 (123-181)||(24505478-24505536)
chr7 (128-182)||(32186422-32186476)
chr7 (132-182)||(42902389-42902439)
chr7 (129-182)||(15091022-15091074)
chr7 (129-182)||(18922930-18922983)
chr7 (127-175)||(17335098-17335146)
chr7 (127-182)||(47220309-47220362)
chr7 (135-182)||(47068968-47069015)
chr7 (128-182)||(39444319-39444373)
chr7 (128-182)||(41715138-41715192)
chr7 (126-175)||(2038092-2038141)
chr7 (129-181)||(44963823-44963875)
chr7 (123-171)||(48460605-48460653)
chr7 (135-182)||(27426783-27426830)
chr7 (133-175)||(40946977-40947019)
chr7 (135-171)||(21920056-21920092)
chr7 (135-171)||(41311060-41311096)
[»] chr8 (22 HSPs)
chr8 (126-181)||(28896902-28896957)
chr8 (129-182)||(36835696-36835749)
chr8 (130-182)||(35037817-35037869)
chr8 (124-175)||(14913839-14913890)
chr8 (129-182)||(196066-196119)
chr8 (129-182)||(310903-310956)
chr8 (129-182)||(43182724-43182777)
chr8 (131-175)||(7223844-7223888)
chr8 (130-182)||(38627341-38627393)
chr8 (130-182)||(38971818-38971870)
chr8 (130-182)||(39002916-39002968)
chr8 (131-175)||(12266073-12266117)
chr8 (131-182)||(464604-464655)
chr8 (128-182)||(21835784-21835839)
chr8 (127-182)||(37766300-37766355)
chr8 (129-175)||(1426327-1426373)
chr8 (126-175)||(38803795-38803844)
chr8 (128-181)||(45393445-45393498)
chr8 (135-171)||(2880293-2880329)
chr8 (126-182)||(29039610-29039666)
chr8 (135-171)||(41674490-41674526)
chr8 (142-182)||(45401502-45401542)
[»] chr2 (29 HSPs)
chr2 (128-182)||(37725905-37725959)
chr2 (128-181)||(40533606-40533659)
chr2 (129-181)||(2316838-2316890)
chr2 (129-181)||(3723941-3723993)
chr2 (130-182)||(28394422-28394474)
chr2 (128-182)||(16814850-16814904)
chr2 (128-182)||(16854130-16854184)
chr2 (127-181)||(35292866-35292920)
chr2 (125-182)||(5084835-5084892)
chr2 (126-175)||(7504019-7504068)
chr2 (129-182)||(18576300-18576353)
chr2 (129-182)||(36947482-36947535)
chr2 (128-172)||(13568211-13568255)
chr2 (130-182)||(18008956-18009008)
chr2 (127-182)||(10711630-10711685)
chr2 (131-182)||(21836639-21836690)
chr2 (124-182)||(19635989-19636047)
chr2 (124-182)||(19834582-19834640)
chr2 (129-175)||(36049464-36049510)
chr2 (132-182)||(45555736-45555786)
chr2 (129-178)||(1860285-1860334)
chr2 (127-172)||(39878917-39878962)
chr2 (128-175)||(6657806-6657853)
chr2 (128-175)||(41840015-41840062)
chr2 (138-181)||(33423741-33423784)
chr2 (127-172)||(36191968-36192013)
chr2 (135-171)||(15362833-15362869)
chr2 (135-171)||(17809393-17809429)
chr2 (135-171)||(33429139-33429175)
[»] chr1 (38 HSPs)
chr1 (128-182)||(10061511-10061565)
chr1 (128-182)||(14131351-14131405)
chr1 (130-182)||(31570972-31571024)
chr1 (129-181)||(43224645-43224697)
chr1 (127-182)||(3150183-3150238)
chr1 (123-182)||(49289223-49289282)
chr1 (131-181)||(9222856-9222906)
chr1 (132-182)||(27038897-27038947)
chr1 (128-182)||(29171519-29171573)
chr1 (128-182)||(39853313-39853367)
chr1 (128-182)||(40850375-40850429)
chr1 (124-182)||(44647240-44647298)
chr1 (128-182)||(47860754-47860808)
chr1 (129-182)||(2684322-2684375)
chr1 (129-182)||(9259816-9259869)
chr1 (129-182)||(50502344-50502397)
chr1 (128-175)||(5057560-5057607)
chr1 (128-175)||(33828863-33828910)
chr1 (128-175)||(33839056-33839103)
chr1 (127-182)||(41321359-41321414)
chr1 (128-175)||(48868061-48868108)
chr1 (127-182)||(52273717-52273772)
chr1 (129-175)||(37765253-37765299)
chr1 (129-175)||(48481210-48481256)
chr1 (129-182)||(7426660-7426713)
chr1 (129-182)||(52079786-52079839)
chr1 (126-182)||(10635242-10635298)
chr1 (128-175)||(1658548-1658595)
chr1 (130-181)||(31015889-31015940)
chr1 (128-182)||(14191248-14191302)
chr1 (130-182)||(41550148-41550200)
chr1 (135-182)||(17376709-17376756)
chr1 (135-182)||(27802166-27802213)
chr1 (129-182)||(8085999-8086052)
chr1 (126-181)||(51184393-51184448)
chr1 (129-182)||(20280575-20280628)
chr1 (129-181)||(7122309-7122361)
chr1 (135-171)||(7435519-7435555)
[»] scaffold0493 (1 HSPs)
scaffold0493 (129-182)||(1741-1794)
[»] scaffold0239 (1 HSPs)
scaffold0239 (128-181)||(15736-15789)
[»] chr5 (28 HSPs)
chr5 (123-182)||(10453634-10453693)
chr5 (131-182)||(16730077-16730128)
chr5 (128-182)||(25684417-25684471)
chr5 (129-182)||(31236588-31236641)
chr5 (133-182)||(32063529-32063578)
chr5 (129-182)||(43411517-43411570)
chr5 (130-182)||(4095012-4095064)
chr5 (133-181)||(8068323-8068371)
chr5 (127-175)||(9530723-9530771)
chr5 (130-182)||(28769947-28769999)
chr5 (127-182)||(42534391-42534446)
chr5 (136-182)||(22798074-22798120)
chr5 (128-182)||(23189066-23189120)
chr5 (128-181)||(40340783-40340836)
chr5 (128-172)||(13588863-13588907)
chr5 (129-181)||(39540719-39540771)
chr5 (127-182)||(41631572-41631627)
chr5 (128-182)||(15726279-15726333)
chr5 (129-182)||(2148127-2148180)
chr5 (124-181)||(19126267-19126324)
chr5 (130-182)||(3882185-3882237)
chr5 (127-175)||(22279215-22279263)
chr5 (127-182)||(32624530-32624585)
chr5 (143-182)||(37313853-37313892)
chr5 (127-182)||(37962992-37963047)
chr5 (135-171)||(2011422-2011458)
chr5 (135-171)||(5204983-5205019)
chr5 (135-171)||(40756907-40756943)
[»] scaffold0022 (1 HSPs)
scaffold0022 (127-182)||(166417-166472)
[»] scaffold0005 (1 HSPs)
scaffold0005 (132-182)||(291977-292027)
[»] scaffold0121 (1 HSPs)
scaffold0121 (128-172)||(13967-14011)
[»] scaffold0067 (1 HSPs)
scaffold0067 (135-171)||(41394-41430)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 2145849 - 2145722
Alignment:
Q  1 atgtacgagtaaaatttctaaatgtaaaaaaggagtgaaggtaggtaaaatatcaatgtacattccatgtagagtaatgaaaagaaataataatgtgttg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2145849 atgtaggagtaaaatttctaaatgtaaaaaaggagtgaaggtaggtaaaatatcaatgtacattccatgtagagtaatgaaaagaaataataatgtgttg 2145750  T
Q  101 aaataatgcaatcgaaggtatgtaaata 128  Q
    ||||||||||||||||||||||||||||    
T  2145749 aaataatgcaatcgaaggtatgtaaata 2145722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 1339262 - 1339209
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1339262 agggaacttctatggtacactcacaattttgagtgtaccggtactcttttttca 1339209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 34969839 - 34969786
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34969839 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 34969786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 18871330 - 18871278
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18871330 gggaacttctatggtacactcacaattttgagtgtaccggtactcttttttca 18871278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 35224828 - 35224882
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  35224828 agggaacttctatggtacactcacaattttgagtgtaccggtactattgtttcac 35224882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 29638734 - 29638787
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  29638734 gggaacttctatggtacactcacaattttgagtgtaccagtactcttgtttcac 29638787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 32518748 - 32518800
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  32518748 ggaacttctatggtacactcacaattttgagtgtaccagtactcctgtttcac 32518800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 34315122 - 34315170
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  34315122 tagggaacttctatggtacacccacaattttgagtgtatcggtactctt 34315170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 24025843 - 24025795
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  24025843 tagggaacttcaacggtacacccacaattttgagtgtaccggtactctt 24025795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 9226609 - 9226562
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  9226609 agggaacttctatgctacacccacaattttgagtgtaccggtattctt 9226562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 33954859 - 33954814
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactct 174  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||    
T  33954859 gggaacttctatggtatactcacaattttgagtgcatcggtactct 33954814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 6015821 - 6015857
Alignment:
Q  146 actcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  6015821 actcacaattttgagtgtaccagtactcttgtttcac 6015857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 24248810 - 24248846
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  24248810 ttctatggtacactcaaaaatttgagtgtaccggtac 24248846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 26811165 - 26811129
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtac 165  Q
    |||||||||||| |||||||||||||||||| |||||    
T  26811165 gggaacttctatagtacactcacaattttgaatgtac 26811129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 10778985 - 10779044
Alignment:
Q  123 taaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10778985 taaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 10779044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 2526582 - 2526525
Alignment:
Q  125 aatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2526582 aatagggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 2526525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 16004533 - 16004585
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16004533 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 16004585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 38955040 - 38955094
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38955040 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 38955094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 44998817 - 44998764
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44998817 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 44998764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 27967919 - 27967864
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  27967919 tagggaacttctatggtacactcacaattttgagtgtaccagtactcttgtttcac 27967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 42244537 - 42244583
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42244537 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 42244583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 46630648 - 46630698
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46630648 aacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 46630698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 36570055 - 36570002
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  36570055 gggaacttctatggtacactcacaattttgagtgtaccagtactcttgtttcac 36570002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 21515395 - 21515344
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  21515395 ggaacttctatgatacactcacaattttgagtgtaccggtactcttgtttca 21515344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 24292383 - 24292332
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  24292383 gaacttctatggtacactcacaattttaagtgtaccggtactcttgtttcac 24292332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 33612930 - 33612884
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  33612930 gggaacttctatggtacacccacaattttgagtgtaccggtactctt 33612884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 48549663 - 48549717
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  48549663 agggaatttctatagtacactcacaattttgagtgtaccgatactcttgtttcac 48549717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 46221993 - 46222045
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  46221993 gggaactt-tatggtacactcacaattttgagtataccggtactcttctttcac 46222045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 54499981 - 54499928
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||    
T  54499981 gggaacttctatcgtacattcataattttgagtgtaccggtactcttgtttcac 54499928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 46633623 - 46633669
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||    
T  46633623 gggaacttctttgccacactcacaattttgagtgtaccggtactctt 46633669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 23639235 - 23639279
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtact 172  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||    
T  23639235 agggaatttctatggtacactcataattttaagtgtaccggtact 23639279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 52257539 - 52257487
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||| ||| |||||||||||||  ||||||||| |||||    
T  52257539 gggaacttctatggtacattcataattttgagtgtattggtactcttgtttca 52257487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 45629513 - 45629463
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||| ||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  45629513 aacttttatggtacattcataattttgagtgtaccggtattcttgtttcac 45629463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 51282338 - 51282289
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||| ||||||| ||||||||  |||||||||||||||||| ||||    
T  51282338 aacttctacggtacacccacaatttaaagtgtaccggtactcttacttca 51282289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 56017196 - 56017147
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||| | ||||| ||||||||||||| ||| |||||||||||||||||    
T  56017196 ataggggatttctacggtacactcacaaattttagtgtaccggtactctt 56017147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 1792227 - 1792191
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  1792227 ttctatggtacactcaatattttgagtgtaccggtac 1792191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 39103939 - 39103903
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  39103939 ttctatggtacactcaaaaatttgagtgtaccggtac 39103903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 40439035 - 40438999
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  40439035 ttctatggtacactcaaaaatttgagtgtaccggtac 40438999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 53973857 - 53973821
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  53973857 ttctatggtacactcaaaaatttgagtgtaccggtac 53973821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 49950924 - 49950977
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49950924 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 49950977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 52782158 - 52782212
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52782158 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 52782212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 36019415 - 36019468
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36019415 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 36019468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 51235928 - 51235875
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51235928 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 51235875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 14460594 - 14460538
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14460594 atagggaacttctatggtacactcataattttgagtgtaccggtactcttgtttcac 14460538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 35352191 - 35352243
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35352191 ggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 35352243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 32720394 - 32720340
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  32720394 agggaacttctatggtacactcacaattttgagtgtatcggtactcttgtttcac 32720340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 35320360 - 35320406
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35320360 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 35320406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 33830937 - 33830885
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  33830937 gggaacttctatggtacactcacaattttgagtgtactggtactcttgtttca 33830885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 44500133 - 44500188
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  44500133 tagggaaattctatggtacactcacaattttgagtgtaccagtactcttgtttcac 44500188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 45927632 - 45927581
Alignment:
Q  124 aaatagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  45927632 aaatagggaacttctatggtacactcataattttgagtgtatcggtactctt 45927581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 48388757 - 48388812
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  48388757 taggaaacttctatggtacactcacaattttgagtgtactggtactcttgtttcac 48388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 50465880 - 50465833
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50465880 agggaacttctatggtacactcacaattttgagtgtaccggtattctt 50465833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 44963011 - 44962965
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  44963011 gggaacttctatggtacactcacaattttaagtgtaccggtactctt 44962965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 53376997 - 53376951
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  53376997 gggaacttctatggtacactcacaattttgaatgtaccggtactctt 53376951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 37567625 - 37567572
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  37567625 gggaacttctatggtacactcataattttgagtgtatcggtactcttgtttcac 37567572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 48925411 - 48925463
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  48925411 gggaatttctatggtacactcacaattttgagtgtactggtactcttgtttca 48925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 2668033 - 2667986
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  2668033 agggaacttctacggtacactcgcaattttgagtgtaccggtactctt 2667986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 53186408 - 53186358
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  53186408 aacttctatggtacactcacaattttgagtgtgctggtactcttgtttcac 53186358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 9322429 - 9322482
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||| ||||||    
T  9322429 gggaacttctatggtaccctcacaattttgagtggactggtactcttgtttcac 9322482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 48990696 - 48990655
Alignment:
Q  134 cttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  48990696 cttctatggtacactcacaattttgagtgcaccggtactctt 48990655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 55365380 - 55365427
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  55365380 ttctatggtacactcacaattttgaatgtactggtactcttgtttcac 55365427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 347098 - 347056
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggta 170  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  347098 agggaacttctatggtacactcataattttgagtgtactggta 347056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 26409629 - 26409683
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||| |||||||||| || ||| ||||||||||||||||| ||||||    
T  26409629 agggaacttctacggtacactcagaaattttagtgtaccggtactcttgtttcac 26409683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 7157037 - 7157084
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||| ||  || ||||||||||||||||||||||||    
T  7157037 agggaacttctatggtgcatccataattttgagtgtaccggtactctt 7157084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 54009314 - 54009267
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||| ||||||||||||  || ||||||||||||||||||||||||    
T  54009314 agggaatttctatggtacatccataattttgagtgtaccggtactctt 54009267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 50560364 - 50560414
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||| |||||||||| |||||| ||| |||||| ||||||    
T  50560364 aacttctatggtacagtcacaattttaagtgtatcgggactcttgtttcac 50560414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 26001201 - 26001237
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  26001201 ttctatggtacactcaatattttgagtgtaccggtac 26001237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 3062303 - 3062247
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3062303 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 3062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 9915566 - 9915512
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9915566 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 9915512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 9923478 - 9923424
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9923478 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 9923424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 42039710 - 42039656
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42039710 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 42039656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 45196803 - 45196857
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45196803 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 45196857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 1282592 - 1282539
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1282592 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 1282539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 25867311 - 25867259
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25867311 ggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 25867259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 24505536 - 24505478
Alignment:
Q  123 taaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  24505536 taaaaagggaacttttatggtacactcacaattttgagtgtaccggtactcttgtttca 24505478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 32186422 - 32186476
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  32186422 agggaatttctatagtacactcacaattttgagtgtaccggtactcttgtttcac 32186476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 42902389 - 42902439
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||    
T  42902389 aacttatacggtacactcacaattttaagtgtaccggtactcttatttcac 42902439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 15091074 - 15091022
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  15091074 gggaacttttatggtacactcacaattttgagtgta-cggtactgttatttcac 15091022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 18922983 - 18922930
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||   ||||||| ||||||    
T  18922983 gggaacttctatggtacactcacaattttgagtgtactaatactcttgtttcac 18922930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 17335146 - 17335098
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  17335146 tagggaacttcaacggtacacccacaattttgagtgtaccggtactctt 17335098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 47220362 - 47220309
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||  |||||||| |||||||||||||||||||||||||| ||||||    
T  47220362 tagggaacttct--ggtacacttacaattttgagtgtaccggtactcttgtttcac 47220309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 47068968 - 47069015
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||||    
T  47068968 ttctatggtacactcacaatcttaagtgtaccggtactcttgtttcac 47069015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 39444373 - 39444319
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||| ||| | |||||||||||||| ||||||||| ||||||    
T  39444373 agggaacttctatggtatacttataattttgagtgtactggtactcttgtttcac 39444319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 41715138 - 41715192
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||| |||||  |||||||||||||||||||||||||| ||||||| ||||||    
T  41715138 agggaatttctacagtacactcacaattttgagtgtaccgatactcttgtttcac 41715192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 2038092 - 2038141
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||  ||||||||||||||||| |||| ||||    
T  2038092 atagggaacttctatggtacatccacaattttgagtgtacaggtattctt 2038141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 44963823 - 44963875
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||| ||||||||   ||||||||||||||||| ||||    
T  44963823 gggaacttctatggtacacccacaatttaaggtgtaccggtactcttacttca 44963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 48460653 - 48460605
Alignment:
Q  123 taaatagggaacttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||| || |||||||||||||||| || |||||||||||||||||    
T  48460653 taaataggtaaattctatggtacactcaaaaatttgagtgtaccggtac 48460605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 27426830 - 27426783
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||| ||||||||||||| ||||||||||||| | ||||||||||||    
T  27426830 ttctacggtacactcacaaatttgagtgtaccgattctcttatttcac 27426783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 40946977 - 40947019
Alignment:
Q  133 acttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||| ||| | ||||||||||||||||||||||||||||    
T  40946977 acttctatcgtatattcacaattttgagtgtaccggtactctt 40947019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 21920092 - 21920056
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  21920092 ttctatggtacactcaaaaatttgagtgtaccggtac 21920056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 41311060 - 41311096
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  41311060 ttctatggtacactcaacattttgagtgtaccggtac 41311096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 28896902 - 28896957
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28896902 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 28896957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 36835749 - 36835696
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36835749 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 36835696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 35037869 - 35037817
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35037869 ggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 35037817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 14913839 - 14913890
Alignment:
Q  124 aaatagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14913839 aaatagggaacttctatggcacactcacaattttgagtgtaccggtactctt 14913890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 196066 - 196119
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  196066 gggaacttctatggtacactcacaattttgagtgtgccggtactcttgtttcac 196119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 310903 - 310956
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  310903 gggaacttctatggtacactcacaattttgagtgtgccggtactcttgtttcac 310956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 43182724 - 43182777
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  43182724 gggaacttctatggtacactcacaattttaagtgtaccggtactcttgtttcac 43182777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 7223888 - 7223844
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7223888 gaacttctatggtacactcacaattttgagtgtaccggtactctt 7223844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 38627393 - 38627341
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  38627393 ggaacttctatggtacactcacaattttaagtgtaccggtactcttgtttcac 38627341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 38971870 - 38971818
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  38971870 ggaacttctatagtacactcacaattttgagtgtaccggtactcttgtttcac 38971818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 39002968 - 39002916
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  39002968 ggaacttctatagtacactcacaattttgagtgtaccggtactcttgtttcac 39002916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 12266073 - 12266117
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  12266073 gaacttctatggtacacccacaattttgagtgtaccggtactctt 12266117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 464655 - 464604
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  464655 gaacttctatggtacattcacaattttgagtgtaccggtattcttgtttcac 464604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 21835839 - 21835784
Alignment:
Q  128 agggaacttctatggtacactcacaa-ttttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  21835839 agggaacttctatggtacactcacaatttttgagtgtaccagtactcttgtttcac 21835784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 37766300 - 37766355
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||    
T  37766300 tagggaacttctatggtacattcacaattttgaatgtactggtactcttgtttcac 37766355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 1426327 - 1426373
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  1426327 gggaaattctatggtacactcacaattttgagtgtactggtactctt 1426373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 38803844 - 38803795
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||||| | || ||| |||||||||||||||||    
T  38803844 atagggaacttctatggtacacttataaattttagtgtaccggtactctt 38803795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 45393445 - 45393498
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||  |||||||||||||||||||||| ||||| ||||||||| |||||    
T  45393445 agggaactgatatggtacactcacaattttgaatgtactggtactcttgtttca 45393498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 2880329 - 2880293
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  2880329 ttctatggtacactcaacattttgagtgtaccggtac 2880293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 29039610 - 29039666
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||| || |||||||||||||||| || ||| ||||||||| ||||||| ||||||    
T  29039610 ataggaaatttctatggtacactcagaaattttagtgtaccgatactcttgtttcac 29039666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 41674490 - 41674526
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  41674490 ttctatggtacactcaacattttgagtgtaccggtac 41674526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 45401542 - 45401502
Alignment:
Q  142 gtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||| ||||||| ||||||| ||||||    
T  45401542 gtacactcacaattttgaatgtaccgctactcttgtttcac 45401502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 37725959 - 37725905
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37725959 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 37725905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 40533659 - 40533606
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40533659 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 40533606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 2316838 - 2316890
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2316838 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 2316890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 3723941 - 3723993
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3723941 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 3723993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 28394474 - 28394422
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28394474 ggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 28394422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 16814850 - 16814904
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  16814850 agggaacttctatgatacactcacaattttgagtgtaccggtactcttgtttcac 16814904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 16854130 - 16854184
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  16854130 agggaacttctatgatacactcacaattttgagtgtaccggtactcttgtttcac 16854184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 35292920 - 35292866
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  35292920 tagggaacttctatggtacactcacaattttaagtgtaccggtactcttgtttca 35292866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 5084835 - 5084892
Alignment:
Q  125 aatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  5084835 aatagggaacttctatcgtacactcataattttgagtgtaccggtactcttgtttcac 5084892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 7504019 - 7504068
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7504019 atagggaacttctatggtacacccacaattttgagtgtaccggtactctt 7504068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 18576300 - 18576353
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  18576300 gggaacttttatggtacactcacaattttgagtgtaccggtactcttgtttcac 18576353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 36947482 - 36947535
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36947482 gggaatttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 36947535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 13568211 - 13568255
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtact 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13568211 agggaacttctatggtacactcacaattttgagtgtaccggtact 13568255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 18008956 - 18009008
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  18008956 ggaacttctatggtacacttacaattttgagtgtaccggtactcttgtttcac 18009008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 10711685 - 10711630
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  10711685 tagggaacttctattgtacactcacaattttgaatgtaccggtactcttgtttcac 10711630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 21836690 - 21836639
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  21836690 gaacttctatggtacactcacaattttgagtgtaccggtgctcttgtttcac 21836639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 19636047 - 19635989
Alignment:
Q  124 aaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  19636047 aaatggggaacttctatggtacactcacaattttgagtgtaccgatacttttgtttcac 19635989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 19834640 - 19834582
Alignment:
Q  124 aaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  19834640 aaatggggaacttctatggtacactcacaattttgagtgtaccgatacttttgtttcac 19834582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 36049464 - 36049510
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  36049464 gggaacttctatggtacattcacaattttgagtgtaccggtactctt 36049510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 45555786 - 45555736
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  45555786 aacttctacggtacactcacaactttgagtgtaccggtactcttatttcac 45555736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 1860334 - 1860285
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatt 178  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1860334 gggaacttctatgatacacccacaattttgagtgtaccggtactcttatt 1860285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 39878917 - 39878962
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtact 172  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  39878917 tagggaacttctatggtacattcacaattttgagtgtaccggtact 39878962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 6657853 - 6657806
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  6657853 agggaacttctatggtacacccataattttgagtgtaccggtactctt 6657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 41840062 - 41840015
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||    
T  41840062 agggaacttctatggtacatccataattttgagtgtaccggtactctt 41840015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 33423741 - 33423784
Alignment:
Q  138 tatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||    
T  33423741 tatggtaccctcacaattttgagtgtactggtactcttgtttca 33423784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 36191968 - 36192013
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtact 172  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||    
T  36191968 tagggaatttctatggtacatttataattttgagtgtaccggtact 36192013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 15362869 - 15362833
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  15362869 ttctatggtacactcaaaaatttgagtgtaccggtac 15362833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 17809429 - 17809393
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  17809429 ttctatggtacactcaaaaatttgagtgtaccggtac 17809393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 33429139 - 33429175
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  33429139 ttctatggtacactcaacattttgagtgtaccggtac 33429175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 10061565 - 10061511
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10061565 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 10061511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 14131351 - 14131405
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14131351 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 14131405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 31570972 - 31571024
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31570972 ggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 31571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 43224645 - 43224697
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43224645 gggaacttctatggtacactcacaattttgagtgtaccggtactcttttttca 43224697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 3150183 - 3150238
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  3150183 tagggaacttctatggtacactcacaattttgagtgtatcggtactcttgtttcac 3150238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 49289223 - 49289282
Alignment:
Q  123 taaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49289223 taaaaagggaatttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 49289282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 9222856 - 9222906
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9222856 gaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 9222906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 27038947 - 27038897
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27038947 aacttctatggtacactcacaattttgagtgtaccggtactcttctttcac 27038897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 29171573 - 29171519
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  29171573 agggaacttctatcgtacactcacaattttgagtgtaccggtactcttgtttcac 29171519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 39853367 - 39853313
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  39853367 agggaacttctatggtacactcataattttgagtgtaccggtactcttgtttcac 39853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 40850429 - 40850375
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  40850429 agggaacttctatggtacactcacaattttgagtgtaccggtattcttgtttcac 40850375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 44647240 - 44647298
Alignment:
Q  124 aaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  44647240 aaatagagaacttctatggtagactcacaattttgagtgtaccggtactcttgtttcac 44647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 47860754 - 47860808
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  47860754 agggaacttctatggtacactcacaattttgagtgtatcggtactcttgtttcac 47860808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 2684375 - 2684322
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2684375 gggaacttctatggtacactcataattttgagtgtaccggtactcttgtttcac 2684322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 9259816 - 9259869
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  9259816 gggaacttctatggtacactcacaattttgaatgtaccggtactcttgtttcac 9259869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 50502344 - 50502397
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  50502344 gggaacttctatggtacattcacaattttgagtgtaccggtactcttgtttcac 50502397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 5057607 - 5057560
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  5057607 agggaacttctatggtacacccacaattttgagtgtaccggtactctt 5057560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 33828863 - 33828910
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33828863 agggaacttctatggtacactcacaattttaagtgtaccggtactctt 33828910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 33839103 - 33839056
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  33839103 agggaacttctatggtacactcacaattttaagtgtaccggtactctt 33839056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 41321414 - 41321359
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  41321414 tagggaacttctatggtacactcacaattttgagtgtattggtactcttgtttcac 41321359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 48868061 - 48868108
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  48868061 agggaacttctatgatacactcacaattttgagtgtaccggtactctt 48868108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 52273717 - 52273772
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  52273717 tagggaacttctatggtacactcacaattttgagtgtaccgttacttttgtttcac 52273772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 37765253 - 37765299
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  37765253 gggaacttttatggtacactcacaattttgagtgtaccggtactctt 37765299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 48481256 - 48481210
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  48481256 gggaacttctatggtacacccacaattttgagtgtaccggtactctt 48481210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 7426660 - 7426713
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  7426660 gggaacttctacggtacactcataattttgagtgtaccggtactcttctttcac 7426713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 52079839 - 52079786
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||    
T  52079839 gggaacttctatgatacactcataattttgagtgtaccggtactcttgtttcac 52079786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 10635242 - 10635298
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||| ||||||    
T  10635242 atagggaatttctatggtacactcacaattttgagtgtgtcggtactcttgtttcac 10635298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 1658548 - 1658595
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  1658548 agggaacttctatggtacacccacaattttgagtgtaccggtattctt 1658595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 31015889 - 31015940
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  31015889 ggaacttctatggtacactcacaattttaagtgtaccgatactcttgtttca 31015940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 14191302 - 14191248
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||    
T  14191302 agggaacttctatagtacactcataattttgagtgtacccgtactcttgtttcac 14191248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 41550148 - 41550200
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||| ||||||    
T  41550148 ggaacttctatggtacactcagaaattttagtgtaccggtactcttgtttcac 41550200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 17376756 - 17376709
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  17376756 ttctatggtacacttacaattttgagtgtaccagtactcttgtttcac 17376709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 27802213 - 27802166
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  27802213 ttctatagtacactcacaattttgaatgtaccggtactcttgtttcac 27802166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 8086052 - 8085999
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||| |||||||| | |||||||||| || ||||||    
T  8086052 gggaacttctatggtacactcataattttgaatttaccggtacttttgtttcac 8085999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 51184448 - 51184393
Alignment:
Q  126 atagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||| ||||||||   |||| |||||||||||| ||||    
T  51184448 atagggaacttctatggtacacccacaatttaaggtgtgccggtactcttacttca 51184393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 20280628 - 20280575
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||| |||||||| | || ||| ||||||||||||||||| ||||||    
T  20280628 gggaacttctacggtacactaagaaattttagtgtaccggtactcttgtttcac 20280575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 7122361 - 7122309
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||  |||||| ||||||||  |||||||||||||||||| ||||    
T  7122361 gggaacttctacagtacacccacaatttaaagtgtaccggtactcttacttca 7122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 7435519 - 7435555
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  7435519 ttctatggtacactcaaaaatttgagtgtaccggtac 7435555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 1794 - 1741
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1794 gggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 1741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 15789 - 15736
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15789 agggaacttctatggtacactcacaattttgagtgtaccggtactcttgtttca 15736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 10453693 - 10453634
Alignment:
Q  123 taaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||    
T  10453693 taaatagggaacttctatggtacactcacaattttgagtgtatcggtacttttgtttcac 10453634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 16730128 - 16730077
Alignment:
Q  131 gaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16730128 gaacttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 16730077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 25684471 - 25684417
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  25684471 agggaacttctatggtacactcataattttgagtgtaccggtactcttgtttcac 25684417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 31236588 - 31236641
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31236588 gggaatttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 31236641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 32063529 - 32063578
Alignment:
Q  133 acttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32063529 acttctatggtacactcacaattttgagtgtaccggtactcttgtttcac 32063578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 43411517 - 43411570
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  43411517 gggaacttctatggtacactaacaattttgagtgtaccggtactcttgtttcac 43411570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 4095064 - 4095012
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  4095064 ggaacttctatggtacactcacaattttgagtgtaccagtactcttgtttcac 4095012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 8068323 - 8068371
Alignment:
Q  133 acttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8068323 acttctatggtacactcacaattttgagtgtaccggtactcttgtttca 8068371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 9530771 - 9530723
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9530771 tagggaacttctatggtacacccacaattttgagtgtaccggtactctt 9530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 28769947 - 28769999
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  28769947 ggaacttctatggtacactcacaattttgagtataccggtactcttgtttcac 28769999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 42534391 - 42534446
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  42534391 tagggaacttctatggtacactcacaattttgagtgtaccgatacttttgtttcac 42534446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 22798074 - 22798120
Alignment:
Q  136 tctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  22798074 tctatggtacactcacaattttgagtgtaccggtactcttgtttcac 22798120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 23189066 - 23189120
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  23189066 agggaacttctatggtacactcacaattttgagtgtaccagtactattgtttcac 23189120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 40340836 - 40340783
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  40340836 agggaacttttatggtacactcacaattttgagtgtcccggtactcttgtttca 40340783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 13588863 - 13588907
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtact 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  13588863 agggaacttctatggtacacccacaattttgagtgtaccggtact 13588907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 39540719 - 39540771
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  39540719 gggaacttctatggtacactcacaattttgagtgtaccgttattcttgtttca 39540771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 41631627 - 41631572
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||    
T  41631627 tagggaacttctatggtacacttataattttgagtgtactggtactcttgtttcac 41631572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 15726333 - 15726279
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||    
T  15726333 agggaacttttatggtacattcacatttttgagtgtaccggtactcttgtttcac 15726279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 2148127 - 2148180
Alignment:
Q  129 gggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  2148127 gggaacttctatggtacactcacaattttaagtgtaatggtactcttgtttcac 2148180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 19126324 - 19126267
Alignment:
Q  124 aaatagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttca 181  Q
    ||||| ||||||||||||||||||||| |||||| |||||| |||||||||| |||||    
T  19126324 aaataaggaacttctatggtacactcataattttaagtgtaacggtactcttgtttca 19126267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 3882237 - 3882185
Alignment:
Q  130 ggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||| ||||||    
T  3882237 ggaacttctatgatacattcacaattttgagtgtatcggtactcttgtttcac 3882185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 22279215 - 22279263
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactctt 175  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  22279215 tagggaacttcaacggtacacccacaattttgagtgtaccggtactctt 22279263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 32624585 - 32624530
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||| |||| ||||| || ||| ||||||||||||||||| ||||||    
T  32624585 tagggaacttctacggtatactcagaaattttagtgtaccggtactcttgtttcac 32624530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 37313853 - 37313892
Alignment:
Q  143 tacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  37313853 tacactcacaattttgagtgtactggtactcttgtttcac 37313892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 37962992 - 37963047
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||| ||||||||||||||||||| || ||  ||||||||||||||||| ||||||    
T  37962992 taggaaacttctatggtacactcagaaattgtagtgtaccggtactcttgtttcac 37963047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 2011458 - 2011422
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  2011458 ttctatggtacactcaacattttgagtgtaccggtac 2011422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 5205019 - 5204983
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  5205019 ttctatggtacactcaaaaatttgagtgtaccggtac 5204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 40756943 - 40756907
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    |||||||||||||||| || |||||||||||||||||    
T  40756943 ttctatggtacactcaaaaatttgagtgtaccggtac 40756907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 166417 - 166472
Alignment:
Q  127 tagggaacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  166417 tagggaacttatatggtacattcacaattttgagtgtaccggtactcttgtttcac 166472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 292027 - 291977
Alignment:
Q  132 aacttctatggtacactcacaattttgagtgtaccggtactcttatttcac 182  Q
    ||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  292027 aacttctatggtacactcacaattttgagtgtatcagtactcttgtttcac 291977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 14011 - 13967
Alignment:
Q  128 agggaacttctatggtacactcacaattttgagtgtaccggtact 172  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  14011 agggaacttctatggtacacccataattttgagtgtaccggtact 13967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 41394 - 41430
Alignment:
Q  135 ttctatggtacactcacaattttgagtgtaccggtac 171  Q
    ||||||||||||||||  |||||||||||||||||||    
T  41394 ttctatggtacactcaacattttgagtgtaccggtac 41430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 17721 times since January 2019
Visitors: 3783