View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_5 (Length: 732)
Name: NF1576_low_5
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 88 - 459
Target Start/End: Complemental strand, 10035598 - 10035222
Alignment:
| Q |
88 |
ttcaagttttgtatagtccaaccttatattattgatctttcnnnnnnnn-cattatattatttatgttgcagataaacacaagtgatttttgtttttcaa |
186 |
Q |
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| T |
10035598 |
ttcaagttttgtatattccaacattatattattgatctttcaaaaaaaaacattatattatttatgttgcagataaacacaagtgatttttgtttttcaa |
10035499 |
T |
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| Q |
187 |
ttaccaatccaaatataagaataaaagtgataagttaataatttgaatattgttggttaaagttattagttgaattaacttataatgacatagaaaatac |
286 |
Q |
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| T |
10035498 |
ttaccaatccaaatataagaataaaagtgataagttaataatttgaatagtgttggttaaagttattagttgaattaacttataatgacatagaaaatac |
10035399 |
T |
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| Q |
287 |
tatatgtttaattaatattgattttttcaattaagataaaagagtaaaacttagagaaaaatgataagttataggctacttgaattaataagctattaat |
386 |
Q |
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| T |
10035398 |
tatatgtttaattaatattgattttttcaattaagataaaagagtaaaatttagagaaaaatgataagttataggctacttgaattgataagctattaat |
10035299 |
T |
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| Q |
387 |
t----ataaaatataagttcatgaaaaaatgttagttaacaaatgagtcctttttagacatatgatttgattagcta |
459 |
Q |
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| T |
10035298 |
taaaaaaaaaaaaaaagttcatgaaaaaatgttagttaacaaatgagtcctttttagacatatgatttgataagcta |
10035222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 470 - 715
Target Start/End: Complemental strand, 10034963 - 10034718
Alignment:
| Q |
470 |
cacaatttaaaacccttaatgtgtattatatacaactaataaatgtccattaacatttattttcctttcattctttacaaactaaccaaacagttgtttc |
569 |
Q |
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| T |
10034963 |
cacaatataaaatccttaatgtgtattatatacaactaataaatgtccatttacatttattttcctttcattctttacaaactaaccaaacagttgtttc |
10034864 |
T |
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| Q |
570 |
aaaatgataggcattagattaatactaatccaataccattcattaatttaagtatttaatcaacggattaaaacataataatacttttggcatttgaaca |
669 |
Q |
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| T |
10034863 |
aaaatgataggcattagattaatactaatccaataccattcattaatttaagtatttaatcaacggattaaaacataataatacttttggcatttgaaca |
10034764 |
T |
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| Q |
670 |
tcatgcactctcataatcaagttttctgttaattgcaaccttaatt |
715 |
Q |
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| T |
10034763 |
tcatgcactctcataatcaagttttctgttaattgcaaccttaatt |
10034718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 8752603 - 8752566
Alignment:
| Q |
288 |
atatgtttaattaatattgattttttcaattaagataa |
325 |
Q |
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| T |
8752603 |
atatgtttaattaatatttattttttcaattaagataa |
8752566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 373
Target Start/End: Complemental strand, 29861476 - 29861388
Alignment:
| Q |
288 |
atatgtttaattaatattga--ttttttcaattaagataa-aagagtaaaacttagagaaaaatgataagttataggctacttgaatta |
373 |
Q |
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|||| ||||||||||||| | |||||||||||||||| | ||| |||||| | |||||||||||||||| |||| |||| || ||||| |
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| T |
29861476 |
atatatttaattaatatttaatttttttcaattaagattacaagggtaaaattgagagaaaaatgataagctataagctaattcaatta |
29861388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 36293299 - 36293360
Alignment:
| Q |
308 |
ttttttcaattaagataa-aagagtaaaacttagagaaaaatgataagttataggctacttg |
368 |
Q |
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||||||||||||||||| ||| | |||| |||||||||||||||||| |||| |||||||| |
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| T |
36293299 |
ttttttcaattaagatagcaagggcaaaatttagagaaaaatgataagctataagctacttg |
36293360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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