View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_53 (Length: 246)
Name: NF1576_low_53
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2323111 - 2322875
Alignment:
| Q |
1 |
acaaatgttcgtcaaaaattgttacacacttggattttgattaattatatattctgtaatctctaactgaatctgttagagcagatttcttctattgctt |
100 |
Q |
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||||||||| || |||||| ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323111 |
acaaatgttgttctaaaattattacacacttggagtttgattaattagatagtctgtaatctctaactgaatctgttagagcagatttcttctattgctt |
2323012 |
T |
|
| Q |
101 |
gtatatgaacattttccttgtagtcttttcattcattctaatttctattgaaccaaattacaagatcagagattttgtctctgttttctagtatgatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2323011 |
gtatatgaacattttccttgtagtcttttcattcattctaatttctattgaaccaaattacaagatcagagattttgtctctgttttctagtatgatttc |
2322912 |
T |
|
| Q |
201 |
aataagttaatcattcatttgaagaatgctctctctg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
2322911 |
aataagttaatcattcatttgaagaatgctctctctg |
2322875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 2296194 - 2296071
Alignment:
| Q |
54 |
ctgtaatctctaactgaatctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaatttctattgaac |
153 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2296194 |
ctgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcattctaatttctattgaac |
2296095 |
T |
|
| Q |
154 |
ca-aattacaagatcagagatttt |
176 |
Q |
| |
|
|| |||||||||| ||| ||||| |
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|
| T |
2296094 |
cacgattacaagatgagatatttt |
2296071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 2312008 - 2311885
Alignment:
| Q |
54 |
ctgtaatctctaactgaatctgttagagcagatttcttctattgcttgtatatgaacattttccttgtagtcttttcattcattctaatttctattgaac |
153 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
2312008 |
ctgtaatctctaactgaatatgttatagcagatttcttctattgcttgtatatgagcattttccttgaagtcttttcattcaatctaatttctattgaac |
2311909 |
T |
|
| Q |
154 |
ca-aattacaagatcagagatttt |
176 |
Q |
| |
|
|| ||||||||||| ||| ||||| |
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|
| T |
2311908 |
cacaattacaagatgagatatttt |
2311885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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