View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_59 (Length: 232)
Name: NF1576_low_59
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 8294759 - 8294572
Alignment:
| Q |
30 |
gtccatgacttgtcaaagagtttataaattaca-tctgacgaaaatcactcaaaagaccgactaaataacaatcagaaccatcacaatttggtttggaag |
128 |
Q |
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|||||||||| |||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8294759 |
gtccatgactggtcaaagagtttataaattacaatgtggcaaaaatcactcaaaagaccgactaaataacaatcagaaccatcacaatttggtttggaag |
8294660 |
T |
|
| Q |
129 |
aggccaccatttttctcattcgtgatgctctaatacctgcgatggaagagttggagggcaagtacaactttgatggtatcaagattct |
216 |
Q |
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| T |
8294659 |
aggccaccaatttcttcaaacgtgatattctattacctgggacggaagagttggagggcaagtacaattttgatggtatcatgattct |
8294572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 30149252 - 30149106
Alignment:
| Q |
1 |
tccttgagtccttatctgactcgactgttgtccatgacttgtcaaagagtttataaattaca-tctgacgaaaatcactcaaaagaccgactaaataaca |
99 |
Q |
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||||||| |||||||||| ||| ||| | |||||||||| ||||| |||||||||||| || | |||| | ||||| |||||||||||||||||||| |
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| T |
30149252 |
tccttgaatccttatctggctcaactataatccatgacttatcaaaaagtttataaattgcaatgtgacaatcatcacctaaaagaccgactaaataaca |
30149153 |
T |
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| Q |
100 |
atcagaaccatcacaatttggtttggaagaggccaccatttttctca |
146 |
Q |
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| T |
30149152 |
atcagaaccatcaaaatttggtttggaagaggccaccattttgctca |
30149106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 30153900 - 30153832
Alignment:
| Q |
73 |
atcactcaaaagaccgactaaataacaatcagaaccatcacaatttggtttggaagaggccaccatttt |
141 |
Q |
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| T |
30153900 |
atcactcaaaagaccgactaaataacaatcagaaccgtcacaatttggtttggaagaggccaccatttt |
30153832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 25755722 - 25755860
Alignment:
| Q |
9 |
tccttatctgactcgactgttgtccatgacttgtcaaagagtttataaattaca-tctgacgaaaatcactcaaaagaccgactaaataacaatcagaac |
107 |
Q |
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|||||||||| ||| ||| | ||||||||||| |||||||||||||||||| || | |||| | ||||||||||||| || ||||||||||||||||||| |
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| T |
25755722 |
tccttatctggctcaactatagtccatgacttttcaaagagtttataaattgcaatgtgacaataatcactcaaaaggccaactaaataacaatcagaac |
25755821 |
T |
|
| Q |
108 |
catcacaatttggtttggaagaggccaccatttttctca |
146 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
25755822 |
catcacaatttggtttggaagaggccgtcatttttctca |
25755860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 25763669 - 25763803
Alignment:
| Q |
9 |
tccttatctgactcgactgttgtccatgacttgtcaaagagtttataaattaca-tctgacgaaaatcactcaaaagaccgactaaataacaatcagaac |
107 |
Q |
| |
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|||||||||||||| ||| | |||||| |||||||||||||||||||||| || | |||| | ||||| ||| ||||| ||||||||||||||| |||| |
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| T |
25763669 |
tccttatctgactcaactatagtccattccttgtcaaagagtttataaattgcaatgtgacaacaatcagtcagaagacagactaaataacaatccgaac |
25763768 |
T |
|
| Q |
108 |
catcacaatttggtttggaagaggccaccattttt |
142 |
Q |
| |
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| T |
25763769 |
catcacagtttggtttggaagaggccaccattttt |
25763803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 25740981 - 25741106
Alignment:
| Q |
9 |
tccttatctgactcgactgttgtccatgacttgtcaaagagtttataaattac-atctgacgaaaatcactcaaaagaccgactaaataacaatcagaac |
107 |
Q |
| |
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|||||||||||||| ||| | ||||||||||| |||||||||||||||||| | || |||| | ||||||| ||||| || ||||||| |||||||||| |
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| T |
25740981 |
tccttatctgactcaactatagtccatgacttttcaaagagtttataaattgctatgtgacaataatcactgaaaaggccagctaaatagcaatcagaac |
25741080 |
T |
|
| Q |
108 |
catcacaatttggtttggaagaggcc |
133 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
25741081 |
catcacaatttggtttggaagaggcc |
25741106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 25733301 - 25733418
Alignment:
| Q |
30 |
gtccatgacttgtcaaagagtttataaattaca-tctgacgaaaatcactcaaaagaccgactaaataacaatcagaaccatcacaatttggtttggaag |
128 |
Q |
| |
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||||| ||||| |||||||||||||||||| || | |||| | ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |
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| T |
25733301 |
gtccacgacttttcaaagagtttataaattgcaatgtgacaataatcactcaaaaggccagctaaatagcaatcagaaccatcacaatttggtttggaag |
25733400 |
T |
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| Q |
129 |
aggccaccatttttctca |
146 |
Q |
| |
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| ||| |||||| |||| |
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| T |
25733401 |
aagccgtcattttactca |
25733418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 25747215 - 25747289
Alignment:
| Q |
72 |
aatcactcaaaagaccgactaaataacaatcagaaccatcacaatttggtttggaagaggccaccatttttctca |
146 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
25747215 |
aatcactcaaaaggccagctaaatagcaatcagatccatcacaatttggtttggaagaggccgtcattttactca |
25747289 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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