View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1576_low_64 (Length: 223)
Name: NF1576_low_64
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 5682180 - 5681986
Alignment:
| Q |
13 |
acacacattttcctaagtatatgaatatttatatgccatgaatatgacatgctcataatttatgtaacatatagtgaaaggaacttttgctttcgtagtg |
112 |
Q |
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| T |
5682180 |
acacacattttcctaagtatatgaatatttatatgccatgaatatgacatgctcataatttatgtaacatatagtgaaaggaacttttgctttcgtagtg |
5682081 |
T |
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| Q |
113 |
ttcaagccaatgatgctccttataatattatattaattagaaaaagaaactactaaatatatactatgaataatggttaactaagaaaagaacct |
207 |
Q |
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| T |
5682080 |
ttcaagccaatgatgttccttataatattatattaattagaaaaagaaactactaaatatatactatgaataatggttaactaagaaaagaacct |
5681986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 5692109 - 5692066
Alignment:
| Q |
27 |
aagtatatgaatatttatatgccatgaatatgacatgctcataa |
70 |
Q |
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| T |
5692109 |
aagtatatgaatatttatataccatgaataagacatgctcataa |
5692066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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