View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1576_low_7 (Length: 712)
Name: NF1576_low_7
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1576_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Original strand, 28676451 - 28677137
Alignment:
| Q |
18 |
catatctgccagatcaccagaagtcaactattaaatcacgggatttagagtaaactaaacaagtagagagaacgatgatgataacattttcatttacaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28676451 |
catatctgccagatcaccagaagtcaactattaaatcacgggatttagagtaaactaaacaagaagagagaacgataatgataacattttcatttacaat |
28676550 |
T |
|
| Q |
118 |
gaatatcaaagctaggaagactgtggtatgctggctttggctgcacgcctttctagtgccttcaacctatttgctttcatacgggctctctgctctgctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28676551 |
gaatatcaaagctaggaagactgtggtatgctggctttagctgcacgcctttctagtgccttcaacctatttgcttccatacgggctctctgctctgctg |
28676650 |
T |
|
| Q |
218 |
ttatctcagcactgctggacagactggttccattatttgggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacagaaatcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28676651 |
ttatctcagcactgctggacagactggttccattatttgggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacagaaatcac |
28676750 |
T |
|
| Q |
318 |
attttgcacgggctgagaaggttcctgcaataaaagagaaggtaatgagttacaaacttcgcatcagatccttgttaacgatttggtttatcactaaata |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28676751 |
attttgcacgggctgagaaggttcctgcaataaaagagaaggtaatgcgttacaaacttcgcatcagatccttgttaacgatttggtttatcactaaata |
28676850 |
T |
|
| Q |
418 |
gaagtgataatggcatcttacatgctgacttcataacaaaggaataattacaagaaatctagagacttaagaaggaaagaaaaataagtataaaccagac |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28676851 |
gaagtgataatggcatcttacatgctgacttcataacaaaggaataattacaagaaatctagagacttaagaaggaaagaaaaataagtataaaccagac |
28676950 |
T |
|
| Q |
518 |
gttcaaatagtctctaatgaaagaatacaacagtcgagagattaatgtttaccctgtatcattaataacacacttttggataagtat-----tnnnnnnn |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28676951 |
gttcaaatagtctctaatgaaagaatacaaaagtcgagagattaatgtttaccctgtatcattaataacacacttttggataagtataataaaaaaaaaa |
28677050 |
T |
|
| Q |
613 |
nnnctaaatctgactgacttaaacattagccaaacaattcagattactcacaaatttgtgagaatacaacagtcttgagagaataat |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28677051 |
aaactaaatctgactgacttaaacattagccaaacaattcagattactcacaaatttgtgagaatacaacagtcttgagagaataat |
28677137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 616 - 677
Target Start/End: Original strand, 28677184 - 28677245
Alignment:
| Q |
616 |
ctaaatctgactgacttaaacattagccaaacaattcagattactcacaaatttgtgagaat |
677 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28677184 |
ctaaatctgactgacttaaacatttgccaaacagttcagattactcacaaatttgtgagaat |
28677245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 45283869 - 45284318
Alignment:
| Q |
18 |
catatctgccagatcaccagaagtcaactattaaatcacgggatttagagtaaactaaacaagtagagagaacgatgatgataacattttcatttacaat |
117 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| |
|
|
| T |
45283869 |
catatctgccagaccaccagaggtcaactattaaatcacggaatttagagtaaactaaacaagtagagagaatgataatggtaatattttcatttacaat |
45283968 |
T |
|
| Q |
118 |
gaatatcaaagctaggaagactgtggtatgctggctttggctgcacgcctttctagtgccttcaacctatttgctttcatacgggctctctgctctgctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45283969 |
gaatatcaaagctaggaagactgtggtatgctggcttttgctgcacgcctttctagtgccttcaacctatttgcttccatacgggctctctgctctgctt |
45284068 |
T |
|
| Q |
218 |
ttatctcagcactgctggacagactggttccattatttgggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacagaaatcac |
317 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45284069 |
ttatctcag----gcaggacagactagttctattatttaggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacag-aatcac |
45284163 |
T |
|
| Q |
318 |
attttgcacgggctgagaaggttcctgcaataaaagagaaggtaatg-agttacaaacttcgcatcagatccttgttaacgatttggtttatcactaaat |
416 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45284164 |
attttgcatcggctgagaaggttcctgcaataaaagagaaggtactgccgttacaaactttgcatcagatccttgtttacgatttggtttatcactaaat |
45284263 |
T |
|
| Q |
417 |
agaagtgataatggcatcttacatgctgacttcataacaaaggaataattacaag |
471 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45284264 |
agaagtgaaaatggcatcttatatgctgacttcataacaaaggaataattacaag |
45284318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 45290330 - 45290779
Alignment:
| Q |
18 |
catatctgccagatcaccagaagtcaactattaaatcacgggatttagagtaaactaaacaagtagagagaacgatgatgataacattttcatttacaat |
117 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| |
|
|
| T |
45290330 |
catatctgccagaccaccagaggtcaactattaaatcacggaatttagagtaaactaaacaagtagagagaatgataatggtaatattttcatttacaat |
45290429 |
T |
|
| Q |
118 |
gaatatcaaagctaggaagactgtggtatgctggctttggctgcacgcctttctagtgccttcaacctatttgctttcatacgggctctctgctctgctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45290430 |
gaatatcaaagctaggaagactgtggtatgctggcttttgctgcacgcctttctagtgccttcaacctatttgcttccatacgggctctctgctctgctt |
45290529 |
T |
|
| Q |
218 |
ttatctcagcactgctggacagactggttccattatttgggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacagaaatcac |
317 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45290530 |
ttatctcag----gcaggacagactagttctattatttaggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacag-aatcac |
45290624 |
T |
|
| Q |
318 |
attttgcacgggctgagaaggttcctgcaataaaagagaaggtaatg-agttacaaacttcgcatcagatccttgttaacgatttggtttatcactaaat |
416 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45290625 |
attttgcatcggctgagaaggttcctgcaataaaagagaaggtactgccgttacaaactttgcatcagatccttgtttacgatttggtttatcactaaat |
45290724 |
T |
|
| Q |
417 |
agaagtgataatggcatcttacatgctgacttcataacaaaggaataattacaag |
471 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45290725 |
agaagtgaaaatggcatcttatatgctgacttcataacaaaggaataattacaag |
45290779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 45291232 - 45291681
Alignment:
| Q |
18 |
catatctgccagatcaccagaagtcaactattaaatcacgggatttagagtaaactaaacaagtagagagaacgatgatgataacattttcatttacaat |
117 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| |
|
|
| T |
45291232 |
catatctgccagaccaccagaggtcaactattaaatcacggaatttagagtaaactaaacaagtagagagaatgataatggtaatattttcatttacaat |
45291331 |
T |
|
| Q |
118 |
gaatatcaaagctaggaagactgtggtatgctggctttggctgcacgcctttctagtgccttcaacctatttgctttcatacgggctctctgctctgctg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45291332 |
gaatatcaaagctaggaagactgtggtatgctggcttgggctgcacgcctttctagtgccttcaacctatttgcttccatacgggctctctgctctgctt |
45291431 |
T |
|
| Q |
218 |
ttatctcagcactgctggacagactggttccattatttgggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacagaaatcac |
317 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45291432 |
ttatctcag----gcaggacagactagttctattatttaggacttcatttgatgtcttttcagttgtgctacttttgggatcagtactcacag-aatcac |
45291526 |
T |
|
| Q |
318 |
attttgcacgggctgagaaggttcctgcaataaaagagaaggtaatg-agttacaaacttcgcatcagatccttgttaacgatttggtttatcactaaat |
416 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45291527 |
attttgcatcggctgagaaggttcctgcaataaaagagaaggtactgccgttacaaactttgcatcagatccttgtttacgatttggtttatcactaaat |
45291626 |
T |
|
| Q |
417 |
agaagtgataatggcatcttacatgctgacttcataacaaaggaataattacaag |
471 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45291627 |
agaagtgaaaatggcatcttatatgctgacttcataacaaaggaataattacaag |
45291681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 17150 times since January 2019
Visitors: 3779