View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1576_low_8 (Length: 703)

Name: NF1576_low_8
Description: NF1576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1576_low_8
NF1576_low_8
[»] chr3 (1 HSPs)
chr3 (1-692)||(655707-656399)


Alignment Details
Target: chr3 (Bit Score: 601; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 655707 - 656399
Alignment:
Q  1 caagacgagccaccggagcaaacccctatgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattacc 100  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  655707 caagacaagccaccggagcaaacacctctgtgtagtcaatcccatattgttgcgcatatcctttggccaccaacctagctttgtacttctctacattacc 655806  T
Q  101 atgttcgttaagcttggttttaaaaacccatttaactccaatagctttgactccattcggcaaggttgtaagtctccacgtgccatttttctctatcgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  655807 atgttcgttaagcttggttttaaaaacccatttaactccaatagctttgactccattcggcaaggttgtaagtctccacgtgccatttttctctatcgag 655906  T
Q  201 tcaatctctttagccatcgcatctctccannnnnnnn-ctttcgcagcttcattgtatgtgactggatcttcttctgttattaccatcattgtttcttcc 299  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  655907 tcaatctctttagccatcgcatctctccatttttttttctttcgcagcttcattgtatgtgactggatcttcttctgttattatcatcattgcttcttcc 656006  T
Q  300 tcctctgaaagtccttctctggttgtgtattctgacatccatgtaggagctcttcgagatctgcatgtaggcgagtttggttcgcttccacctgatgaag 399  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  656007 tcctctgaaagtccttctccggttgtgtattctgacatccatgcaggagctcttcgagatctgcctgtaggcgagtttggttcgcttccacctgatgaag 656106  T
Q  400 ttgcggaggagtttcctcctgtttgcgagattgtgttacttgtattagaatcagagtcttcttctaactctaactctttgttggcatctgaatttttatc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656107 ttgcggaggagtttcctcctgtttgcgagattgtgttacttgtattagaatcagagtcttcttctaactctaactctttgttggcatctgaatttttatc 656206  T
Q  500 ttcccagtccagcacatctgattgcgcttctcctttactttgttcccatttccagcatgcattttcttcaaattttacatctttgctgattgttattttc 599  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  656207 ttcccagtccaacacatctgattgtgcttctcctttgctttgttcccatttccagcatgcattttcttcaaattttacatctctgttgattgttattttc 656306  T
Q  600 ttggtaataggatcaaagagtttgtatgctttggactcctttctcacaccaagaaaaatgtgtgttttgcttttttcatctagctttattctt 692  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  656307 ttggtaataggatcaaagagtttgtatgctttggactccttgctcacaccaagaaaaatgtgtgttttgcttttgtcatctagctttattctt 656399  T

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