View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613-INSERTION-4 (Length: 709)
Name: NF1613-INSERTION-4
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613-INSERTION-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 672; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 8 - 709
Target Start/End: Complemental strand, 47269807 - 47269106
Alignment:
| Q |
8 |
gaaatatctttatcgtagctaattattggttgcaaatttgcaactataaattaattattatgattaggtacatcttacaaaaactgtagatgtagatgga |
107 |
Q |
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| T |
47269807 |
gaaatatctttatcgtagctaattattggttgcaaatttgcaactataaattaattattatgattaggtacatcttacaaaaactgtagatgtagatgga |
47269708 |
T |
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| Q |
108 |
tttattgctggaactacagagaatgcattaggctggttttctcagggagataccaatgatcagattctaaactttgccaatgcttacaacccttctcctc |
207 |
Q |
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| T |
47269707 |
tttattgctggaactacagagaatgcattaggctggttttctcagggagataccaatgatcagattctaaactttgccaatgcttacaacccttctcctc |
47269608 |
T |
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| Q |
208 |
tcaggtactttttattgccattgattcgaytgtacattccaagtgaatttgtatcaaattgtttattgctcttatttctgaatatagtgatcaccaatca |
307 |
Q |
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| T |
47269607 |
tcaggtactttttattgccattgattcgattgtacattccaagtgaatttgtatcaaattgtttattgctcttatttctgaatacagtgatcaccaatca |
47269508 |
T |
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| Q |
308 |
ctgagtactgttgttgatatggtaacgccaacttcgacccttctgaactctgcaaacgtcgatcacaattgtcaaattagttccagggatgctgcagagg |
407 |
Q |
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| T |
47269507 |
ctgagtactgttgtcgatatggtaacgccaacttcgacccttctgaactctgcaaacgtcgatcacaattgtcaaattagtcccagggatgctgcagagg |
47269408 |
T |
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| Q |
408 |
ctgacattagtaatacactaagtactcagtttggacaagttatggacaccagtttgtcttcttgggagcacctccatcaattaggtacttaattgaataa |
507 |
Q |
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| T |
47269407 |
ctgacattagtaatacactaagtactcagtttggacaagttatggacaccagtttgtcctcttgggagcacctccatcaattaggtacttaattgaataa |
47269308 |
T |
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| Q |
508 |
attccaagtataattaactgtgtttgtgctgtaacttgatttgataatgcacattagttgaataaataattactgaaaatttactttttatttggtattt |
607 |
Q |
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| T |
47269307 |
attccaagtataattaactgtagttgtgctgtaacttgatttgataatgcacattagttgaataaataattactgaaaatttactttttatttggtattt |
47269208 |
T |
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| Q |
608 |
cagtttgatatattgatgataagattgtcataaaactaatagttcccaagtgtagttttggagtcgttgttttgtaatgaaatttgtacactgatgtttg |
707 |
Q |
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| T |
47269207 |
cagtttgatatattgatgataagattgtcataaaactaatagttcccaagtgtagttttggagtcattgttttgtaatgaaatttgtacactgatgtttg |
47269108 |
T |
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| Q |
708 |
aa |
709 |
Q |
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|| |
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| T |
47269107 |
aa |
47269106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 512
Target Start/End: Complemental strand, 47260719 - 47260601
Alignment:
| Q |
393 |
gggatgctgcagaggctgacattagtaatacactaagtactcagtttggacaagttatggacaccagtttgtcttcttgggagcacctccatcaattagg |
492 |
Q |
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|||||| ||||||||||||||| | || || | ||||| ||||||||||||||| ||| ||||||| | | || ||||||||||| ||||||| | | | |
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| T |
47260719 |
gggatggtgcagaggctgacatcaatagtaaagtaagtgctcagtttggacaagctatagacaccaatatatc-ccttgggagcacttccatcattaaag |
47260621 |
T |
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| Q |
493 |
tacttaattgaataaattcc |
512 |
Q |
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|||||| ||||||| ||||| |
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| T |
47260620 |
tacttacttgaatatattcc |
47260601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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