View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613-INSERTION-5 (Length: 678)
Name: NF1613-INSERTION-5
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613-INSERTION-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 125 - 678
Target Start/End: Complemental strand, 42070517 - 42069962
Alignment:
| Q |
125 |
agtagaattgattttgtgaaaaatgattccaacttaaa-gttatattttatagctcattgtacaactcactattatatttatgtctccaaattaaatact |
223 |
Q |
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| T |
42070517 |
agtagaattgattttgtgaaaaatgattccaacttaaaagttatattttatagctcattgtacaactcactattatatttatgtctccaaattaaatact |
42070418 |
T |
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| Q |
224 |
accgttattctaaaaatgtgtttaatgattacaatcacttattttgaaaacttattgaggtttcttattagtaggcattttaaaattgattgaaagaaac |
323 |
Q |
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| T |
42070417 |
accgttattctaaaaatgtgtttaatgattacaatcacttattttgaaaacttattgaggtttcttattagtaggcattttaaaattgattgaaagaaac |
42070318 |
T |
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| Q |
324 |
gtttgcataaactatagtacaattctaa-cattgtttgtatctttgatgcaaggaaagaactggtaagaatattctctctatattaaatgcctaacgcac |
422 |
Q |
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| T |
42070317 |
gtttgcataaactatagtacaattctaaacattgtt-gtatctttgatgcaaggaaagaactggtaagaatattctctctatattaaatgcctaacgcac |
42070219 |
T |
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| Q |
423 |
gaactataaccaatcatggttgttattttttccccatgcaaatgcgatgacccttcatggtgtttaagattgtaaactcatgcatcgaaccaaaggtcac |
522 |
Q |
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| T |
42070218 |
gaactacaaccaatcatggttgttattttttccccatgcaaatgcggtgacccttcatggtgtttaagattgtaaactcattcatcgaaccaaaggtcac |
42070119 |
T |
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| Q |
523 |
tgttaatttcaaaatagagaaaccaattatcaaatccatgaagtgaaaaaagatcaattccacgaagtgaataaatattcaatttgatctttgatatcgt |
622 |
Q |
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| T |
42070118 |
tgttaatttcaaaatagagaaaccaattatcaaatccatgaagtgaaaaaagataaattccacgaagtgaataaatattcaatttgatctttgatatcgt |
42070019 |
T |
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| Q |
623 |
agaccaacggaatgnnnnnnnt-ataatcatcgagtcgtgcaagggtttaggttttc |
678 |
Q |
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| T |
42070018 |
agaactacggaatgaaaaaaataataatcatcgagtcgtgcaagggtttaggttttc |
42069962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 42070623 - 42070533
Alignment:
| Q |
8 |
ttcacatgagtcaatcatagattgaggaccaattaaaattgtgtttggttccaccttaaaatgtcaacattgatattagatgcatgtaattaa |
100 |
Q |
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| T |
42070623 |
ttcacatgagt-aatcat-gattgaggaccaattaagattgtgtttggttccactttaaaatgtcaacattgatattagatgcatgtaattaa |
42070533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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