View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613-INSERTION-7 (Length: 632)
Name: NF1613-INSERTION-7
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613-INSERTION-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 7 - 632
Target Start/End: Complemental strand, 45016888 - 45016264
Alignment:
| Q |
7 |
atgcaagatgtccaagttcacctaattactctggaaaatacccctaaggtacaatttgatactctataagactattcattcctaagttgcttaagacatg |
106 |
Q |
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| T |
45016888 |
atgcaagatgtccaagttcacctaattactctggaaaatacccctaaggtacaatttgatactctataagactattcattcctaagttgcttaagacatg |
45016789 |
T |
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| Q |
107 |
tgctattgcannnnnnngttttaaatttaataagcttatatttgtgtacaggttattactgagaaaaacatgcacttggaagagccaaagccaagaatta |
206 |
Q |
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| T |
45016788 |
tgctattgcatttttttgttttaaatttaacaagcttatatttgtgtacaggttattactgagaaaaacatgcatttggaagagccaaagccaagaatta |
45016689 |
T |
|
| Q |
207 |
atgagaggatggatttagaactcaatgattatgcaccatctggggcaaatggtcgtcacactccaagagcaccgtaatggtgtgtaagctgattaaatgt |
306 |
Q |
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| T |
45016688 |
atgagaggatggatttagaactcaatgattatgcaccatctggggcaaatggtcgtcacactccaagagcaccgtaatggtgtgtaagctgattaaatgt |
45016589 |
T |
|
| Q |
307 |
tagtagttcctctagctaggtgccnnnnnnnnnnnnngcatgcatcctctatgtaaaacaatattaattaagttaatatatgagttttattgtagaggca |
406 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45016588 |
tagtagttcctctagctaggtgcc---tatattatatgcatgcatcctctatgtaaaacaatattaattaagttaatatatgagttttattgtagaggca |
45016492 |
T |
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| Q |
407 |
tttatatatgatgaaagaaaggactaaatattaagagtaaatcaaatccccattgtttatgatgtatgggatcttagaaactcatgtacgttaa-aaaca |
505 |
Q |
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| T |
45016491 |
tttatatatgatgaaagaaaggactaaatatt-agagtaaatcaaatccccattgtttatgatgtatgggatcgtaggaactcatgtacgttaattaaca |
45016393 |
T |
|
| Q |
506 |
tcttcttatgtatccatgtactagaatttcaattatagttatataatttattga-cctattatgttctgtcgcag-aatgatatttgatcagttacacta |
603 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
45016392 |
tcttcttatgtatccatgtagtagaatttcaattatagttatataatttattgaccctattatgttctgtcacagaaatgatatttgatcagttacacta |
45016293 |
T |
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| Q |
604 |
tcagttctaagaaacagccattgattttg |
632 |
Q |
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| T |
45016292 |
tcagttctaagtaacagccattgattttg |
45016264 |
T |
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