View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_high_4 (Length: 441)
Name: NF1613_high_4
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 1857617 - 1858050
Alignment:
| Q |
1 |
atggagatatcagatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattac |
100 |
Q |
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| T |
1857617 |
atggagatatcggatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattac |
1857716 |
T |
|
| Q |
101 |
tttaggagtttttgcatacaaatttcagtttata----attctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgannn |
196 |
Q |
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| T |
1857717 |
tttaggagtttttgcatacaaatttcagtttatatataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgattt |
1857816 |
T |
|
| Q |
197 |
nnnnaagtgtagagactgagatggaagtgttctttaataataagaaatcacttaccaaattttaccgtaaaaatcacaattaacacataaatgatcatta |
296 |
Q |
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| T |
1857817 |
ttttaagtgtagagactgagatggaagtgttctttaataataagaaatcactgaccaaattttaccgtaaaaatcacaattaacacataaatgatcatta |
1857916 |
T |
|
| Q |
297 |
tcctgattcaatacacaacctcccgtacaagattgatcattgggtgatagcacacaccaccaaattaagttgtctctagtttgaacctggtaaagaagca |
396 |
Q |
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| T |
1857917 |
ttctgattcaatacataacctcccgtacaagattgatcattgggtgatagcacacaccaccaaattaagttgtctctagtttgaacctggtaaagaagca |
1858016 |
T |
|
| Q |
397 |
aacgtcacgcaaagagagatatttttgaaggaac |
430 |
Q |
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| T |
1858017 |
aacgtcacgcaaagagagatatttttaaaggaac |
1858050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 1869215 - 1869408
Alignment:
| Q |
1 |
atggagatatcagatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagtt-ccatttcatta |
99 |
Q |
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||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
1869215 |
atggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttataagacaaaatgcagtaaccatttcatta |
1869314 |
T |
|
| Q |
100 |
ctttaggagtttttgcatacaaatttcagtttataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatga |
193 |
Q |
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| T |
1869315 |
ttttaggagtttttgcatacaaatttcagtttataattctaatgtaatttgttttatataatgtgttgtgtgcatgtaatccagtttttaatga |
1869408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1843606 - 1843828
Alignment:
| Q |
1 |
atggagatatcagatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagt-tccatttcatta |
99 |
Q |
| |
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||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
1843606 |
atggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttttaagacaaaatgcagtaaccatttcatta |
1843705 |
T |
|
| Q |
100 |
ctttaggagtttttgcatacaaatttcagtttataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgannnnnn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| |
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| T |
1843706 |
ttttaggagtttttgcatacaaatttcagtttataattttaatttaatttat-------------ttgtgtgcatgtaatccagtttttaatga-ttgta |
1843791 |
T |
|
| Q |
200 |
naagtgtagagactgagatggaagtgttctttaataa |
236 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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|
| T |
1843792 |
taagtgtagagactgagatggaagtgttctataataa |
1843828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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